TemplateJournalsbiologymedicine

BMC (BioMed Central)

Official bmcart class for BioMed Central journals such as BMC Biology, BMC Bioinformatics, and Genome Biology, with the bmc-mathphys bibliography style.

LPPL 1.0+

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What’s inside

Starter files

main.tex2.1 KB

% Trimmed from the official BMC LaTeX template (bmc_article.tex),
% http://media.biomedcentral.com/content/production/bmc_article-tex.zip
\documentclass{bmcart}

\usepackage[utf8]{inputenc}

\startlocaldefs
\endlocaldefs

\begin{document}

\begin{frontmatter}

\begin{fmbox}
\dochead{Research}

\title{A sample article title}

\author[
   addressref={aff1},
   corref={aff1},
   email={first.author@example.edu}
]{\inits{FA}\fnm{First} \snm{Author}}
\author[
   addressref={aff2},
   email={second.author@example.org}
]{\inits{SA}\fnm{Second} \snm{Author}}

\address[id=aff1]{%
  \orgname{Department of Biology, Example University},
  \city{City},
  \cny{Country}
}
\address[id=aff2]{%
  \orgname{Example Research Institute},
  \city{City},
  \cny{Country}
}
\end{fmbox}

\begin{abstractbox}
\begin{abstract}
\parttitle{Background}
BMC journals use a structured abstract; replace these part titles with the ones your target journal asks for.
\parttitle{Results}
Summarize the key findings here.
\parttitle{Conclusions}
State the take-home message.
\end{abstract}

\begin{keyword}
\kwd{sample}
\kwd{article}
\kwd{template}
\end{keyword}

\end{abstractbox}

\end{frontmatter}

\section*{Background}
Introduce the problem and cite prior work~\cite{darwin1859,doudna2014}. BMC journals use unnumbered sections; check your journal's instructions for the required section order.

\section*{Methods}
Display equations are numbered:
\begin{equation}
  \frac{dS}{dt} = -\beta S I, \qquad \frac{dI}{dt} = \beta S I - \gamma I.
  \label{eq:sir}
\end{equation}

\section*{Results}
Refer to Eq.~(\ref{eq:sir}) in the text. Small tables go in standard \texttt{table} environments; figures are referenced by caption at submission.

\section*{Conclusions}
Summarize the findings. Ask the agent in the chat to draft sections, structure the abstract, or format your reference list for you.

\begin{backmatter}

\section*{Competing interests}
The authors declare that they have no competing interests.

\section*{Acknowledgements}
Thanks and funding notes go here.

\bibliographystyle{bmc-mathphys}
\bibliography{references}

\end{backmatter}
\end{document}

Libraries and docs

bmc-mathphys.bst60 KB

%% This is file `bmc-mathphys.bst' (created: 2011-12-27)
%% Compatible with bibtex version 0.99d.
%%
%% Please submit bugs or your comments to vtex@vtex.lt
%% Start subject with a "[BMC] bibtex: " + subject
%%
%% Sorting entries is done by name and year fields!
%%
%% You are free to use this style file as you see fit, provided 
%% that you do not make changes to the file. 
%% If you DO make changes, you are required to rename this file.
%%
%% It may be distributed under the terms of the LaTeX Project Public
%% License, as described in lppl.txt in the base LaTeX distribution.
%% Either version 1.0 or, at your option, any later version.
%%
%% LIMITATIONS:
%% If you are getting error like
%% "Sorry---you've exceeded BibTeX's number of string global-variables"
%% that means you are using to old bibtex version. You should download latest version 0.99d. 
%% (One of the binaries location is minimals.contextgarden.net/current/bin/common/)
%%
%% BibTeX programming: Linas Stonys, VTeX, Lithuania, lstonys@vtex.lt
%
% Changes:
% 2013-07-15 -- added XML output (taken from bmc_article.bst) v2.0
%
% Settings:
% It's possible to pass few options to bibtex style via @settings reference. 
% To validate options, need to write that reference (@settings) citeing key (f.e: \citation{foo}) 
% to aux file. From tex file it can be done with \nocite{} command.
%
%	Examples:
%		1) To make unsorted bibliography (bibs listed as cited)  
%			a) write to bib file:
%				@settings{label, options="unsort"}
%			b) write in tex file \nocite{label}
%		
%		2) To make author-year bibliography
%			a) write to bib file:
%				@settings{label, options="nameyear"}
%			b) write in tex file \nocite{label}
%		
%		3) To make alphanumerical unsorted bibliography (bibs listed as cited)  
%			a) write to bib file:
%				@settings{label, options="alpha,unsort"}
%			b) write in tex file \nocite{label}
% 
% By default, style produces unsorted bibliography. 
%

ENTRY
  { address
    author
    booktitle
    bnumber
    chapter
    doi
    edition
    editor
    howpublished
    institution
    isbn
    journal
    key
    month
    note
    number
    organization
    pages   
    publisher
    school
    series
    title
    type
    volume
    year
    url
    info
    options
    urldate
    eprint
  }
  {}
  { label extra.label sort.label short.list}

INTEGERS { output.state before.all mid.sentence after.sentence
           after.block after.authors between.elements bother
           Nisbn Nmonth slen set.settings tmp month.printed}

FUNCTION {init.state.consts}
{ #0 'before.all :=
  #1 'mid.sentence :=
  #2 'after.sentence :=
  #3 'after.block :=
  #4 'after.authors :=
  #5 'between.elements :=
}

STRINGS { s t  element}
STRINGS { longest.label last.label list.string default.list}
STRINGS { v l f j b temp.str}

FUNCTION {output.nonnull}
{ 's :=
  output.state mid.sentence =
    { " " * write$ newline$}
    { output.state after.block =
        { add.period$ write$
          newline$
        }
        {
          output.state after.authors =
          { ": " * write$
            newline$
          }
          { output.state between.elements =
              { ", " * write$ newline$}
              { output.state before.all =
                  'write$
                  { add.period$ " " * write$ newline$}
                if$
              }
            if$
          }
          if$
        }
      if$
      mid.sentence 'output.state :=
    }
  if$
  s
}

FUNCTION {output}
{ duplicate$ empty$
    'pop$
    'output.nonnull
  if$
}

FUNCTION {output.check}
{ 't :=
  duplicate$ empty$
    { pop$ "empty " t * " in " * cite$ * warning$ }
    'output.nonnull
  if$
}
FUNCTION {fin.entry}
{ write$ newline$ }

FUNCTION {stupid.colon}
{ after.authors 'output.state := }


FUNCTION {insert.comma}
{ output.state before.all =
    'skip$
    { between.elements 'output.state := }
  if$
}

FUNCTION {new.sentence}
{ output.state after.block =
    'skip$
    { output.state before.all =
        'skip$
        { after.sentence 'output.state := }
      if$
    }
  if$
}

FUNCTION {not}
{   { #0 }
    { #1 }
  if$
}

FUNCTION {and}
{   'skip$
    { pop$ #0 }
  if$
}

FUNCTION {or}
{   { pop$ #1 }
    'skip$
  if$
}


FUNCTION {field.or.null}
{ duplicate$ empty$
    { pop$ "" }
    'skip$
  if$
}

FUNCTION {sort.format.month}
{ 't :=
    t #1 #2 substring$ "01" =
    t	#1 #1 substring$ "1" =
    t	#2 #2 substring$ "" =
    and or
    { "January" }
    { t #1 #2 substring$ "02" =
      t	#1 #1 substring$ "2" =
      t	#2 #2 substring$ "" =
      and or
      { "February" }
      { t #1 #2 substring$ "03" =
         t #1 #1 substring$ "3" =
         t	#2 #2 substring$ "" =
         and or
        { "March" }
        { t #1 #2 substring$ "04" =
          t #1 #1 substring$ "4" =
          or
          { "April" }
          { t #1 #2 substring$ "05" =
             t #1 #1 substring$ "5" =
             or
            { "May" }
            { t #1 #2 substring$ "06" =
              t #1 #1 substring$ "6" =
              or
              { "June" }
              { t #1 #2 substring$ "07" =
                t #1 #1 substring$ "7" =
                or
                { "July" }
                { t #1 #2 substring$ "08" =
                   t #1 #1 substring$ "8" =
                   or
                  { "August" }
                  { t #1 #2 substring$ "09" =
                    t #1 #1 substring$ "9" =
                    or
                    { "September" }
                    { t #1 #2 substring$ "10" =
                      { "October" }
                      { t #1 #2 substring$ "11" =
                        { "November" }
                        { t #1 #2 substring$ "12" =
                          { "December" }
                          { t } % No match
                        if$
                        }
                      if$
                      }
                    if$
                    }
                  if$
                  }
                if$
                }
              if$
              }
            if$
            }
          if$
          }
        if$
        }
      if$
      }
    if$
    }
  if$
 
}

INTEGERS {sk}
FUNCTION {is.num}
{	chr.to.int$
   duplicate$ "0" chr.to.int$ < not
  swap$ "9" chr.to.int$ > not and
}

FUNCTION {make.tag}
{ 't :=
  duplicate$ empty$
    { pop$ "" }
    { bother #0 =
      {	
        t "volume" =
          {"\textbf{"  swap$ * "}" * }
          'skip$
        if$
      }
      { "\b" t * "{" * swap$ * "}" * }
    if$
    }
  if$
}



FUNCTION {springer.publisher}
{publisher #1 #8 substring$ "Springer" =
    { "Springer"  }
    { publisher }
 if$
}

FUNCTION {format.pub.address}
{ publisher empty$
  howpublished empty$
  and
    { 
    address empty$
      'skip$
        {	volume empty$
            'insert.comma
            'new.sentence
          if$
          address
          type$ "inproceedings" =
            {"conflocation"}
            {"location"}
           if$	
          make.tag output
        }
      if$
    }
    { 
      address empty$
        {	publisher empty$
            {howpublished} 
            {springer.publisher} 
          if$ 
           "publisher" make.tag
          #1 bother =
            {", \blocation{???}" *  }
            'skip$
           if$
           output   
        }
        {
          publisher empty$
            {howpublished } 
            {springer.publisher } 
           if$ 
          "publisher" make.tag output
          insert.comma
          address "location" make.tag output
        }
      if$
    }
  if$
}

INTEGERS { nameptr namesleft numnames }

FUNCTION {mk.tag}
{ 'temp.str :=
  duplicate$ empty$
    { pop$ "" }
    { 
      b "nothing" =
        'skip$
        { "\b" temp.str * "{" * swap$ * "}" * }
      if$
    }
  if$
}

FUNCTION {space.after.dot}
{'j :=
  t 'f :=
  j 't := 
  s 'j :=
  "" 'l :=
  "" 's :=
  { t empty$ not }
  {   
    t #1 #3 substring$ "{-}" =
      { l  " {q}. " * 'l :=
        t #4 global.max$ substring$ 't :=
      }
       'skip$ 	
    if$

    t #1 #1 substring$ 's :=
    l  s * 'l := 
    s "." = 
      { 
        t #2 #1 substring$ " " =
          'skip$
           {
            l  " " * 'l := 
             t #2 #4 substring$ "{\,}" =
               { t #5 global.max$ substring$ 't := }
               'skip$
            if$ 
          } 
        if$  
      } 
      'skip$
    if$    
      t #2 global.max$ substring$ 't :=
  }
  while$
  f 't :=
  j 's :=
  l 
}

FUNCTION {fix.inits}{
  't :=
   "" 'element :=
  { t empty$ not }
  {  
    t #1 #3 substring$ ".q." =
      { element  ".-" * 'element :=
        t #3 global.max$ substring$ 't :=
       }
       {element  t #1 #1 substring$ * 'element :=}
    if$
  
    t #2 global.max$ substring$ 't :=
  }
  while$
  element
}

FUNCTION {fix.snm}{
  't :=
   "" 'element :=
  { t empty$ not }
  {  
    t #1 #3 substring$ "{-}" =
      {element  "-" * 'element :=
        t #3 global.max$ substring$ 't :=
       }
       {element  t #1 #1 substring$ * 'element :=}
     if$
  
    t #2 global.max$ substring$ 't :=
  }
  while$
  element
}

FUNCTION {enbrace.dash}{
  't :=
  "" 'element :=
  { t empty$ not }
  {  
    t #1 #1 substring$ "-" =
      {element  "{-}" * 'element :=}
       {element  t #1 #1 substring$ * 'element :=}
    if$
    t #2 global.max$ substring$ 't :=
  }
  while$
  element
}

FUNCTION {fix.name}{	

  enbrace.dash 's :=
  "" 'l :=
  "" 't :=

  #1 'nameptr :=
  s num.names$ 'numnames :=
  numnames 'namesleft :=
  { namesleft #0 > }
  {
     s nameptr "{vv~}{ll}{, jj}" format.name$
     s nameptr "{, ff}" format.name$ space.after.dot * 'l :=
    #1 nameptr = 
      {l 't :=}
      {t " and " * l * 't := }
    if$
    nameptr #1 + 'nameptr := 
    namesleft #1 - 'namesleft :=
  }
  while$
  t 
}

FUNCTION {name.separator}{
  namesleft #1 >
    {", " * }
    'skip$
  if$
}

FUNCTION {format.author.editor}
{ 'b :=

  bother #1 =
  b "nothing" =
  or
    'skip$
    {"b" b * 'b :=}
  if$

   b "editor"  =
   b "beditor" =
   b "nothing" =
   or or
    {editor 's :=}
    {author 's :=}
  if$
  
   %% modifying name
  s fix.name 's :=

  "" 't :=	
 
  #1 'nameptr :=
  s num.names$ 'numnames :=
  numnames 'namesleft :=
    
  s numnames "{ll}" format.name$ 'l :=
  l  "others" =
   l  "{others}" =
   l  "et al." =
   l  "{et al.}" =
   or or or
     {#1 'tmp :=}
     {#0 'tmp :=}
  if$
    
  { namesleft #0 > }
  {	s nameptr "{vv}" 	  format.name$           "particle" mk.tag  'v := 
    s nameptr "{ll}" 	  format.name$ fix.snm   "snm"      mk.tag  'l :=   
    s nameptr "{f{.}.}" format.name$ fix.inits "inits"    mk.tag  'f := 
     s nameptr "{jj}" 	  format.name$           "suffix"   mk.tag  'j := 
  
    
     namesleft #1 =
     tmp #1 = 
     and
       {	b "bauthor" =
         b "beditor" =
        or
          {"et al."}
           {"\betal"}
        if$
        #1 'tmp :=
      }
       {
         b "bauthor" =
         b "beditor" =
         or
          {"\oauthor{"}
          {
             b "nothing" =
               {""}
              {"\b" b * "{" *}
            if$
          }
        if$			

        v empty$
          'skip$
          {v * " " *}
        if$
        
           l empty$
            'skip$
          { l *} 		
        if$			
  
           f empty$
          'skip$
          {", " * f *} 		
        if$
  
           j empty$
            'skip$
          {" "  * j *} 		
        if$

         b "nothing" =
           {""}
          {"}"}  
        if$
      
        * "" 't :=
      } 
    if$

    name.separator
    write$ 
        
    namesleft #1 >
    b "nothing" = not
    and
      {	namesleft #2 =
         tmp #1 =
         and
          'skip$
          'newline$
         if$
      }
      'skip$
    if$

    nameptr #1 + 'nameptr := 
    namesleft #1 - 'namesleft :=
  }
  while$
}

FUNCTION {format.editors}
{ editor empty$
    'skip$
    {
      bother #0 =
        {	author empty$
             {"editor"}
             {"nothing"}
            if$
        }
        {"editor"}
      if$  
      format.author.editor
      editor num.names$ #1 >
        { " (eds.)" }
        { " (ed.)" }
      if$
      write$
    }
  if$
}

FUNCTION {format.authors}
{ author empty$
    'skip$
    {"author"  format.author.editor}
  if$
}

FUNCTION {cite.author.editor}
{ 's :=
  s #1 "{vv~}{ll}" format.name$
  s num.names$ duplicate$
  #2 >
    { pop$ " et~al." * }
    { #2 =
        {	s #2 "{vv~}{ll}{ jj}{ f}" format.name$ "others" =
            { " et~al."  * }
            { " and " * s #2 "{vv~}{ll}" format.name$ * }
           if$
         }
         'skip$
        if$
    }
  if$
}

FUNCTION {check.auth.edit.org}
{author empty$
  {
    editor empty$
      {
        organization empty$
          {""}
          {organization}
        if$		
      }
      {editor cite.author.editor}
    if$		
  }
  {author cite.author.editor}
 if$	
}

FUNCTION {check.year}
{	year empty$
    {""}
    {year extra.label *}
  if$	
}

INTEGERS { multiresult char.num k int}
INTEGERS {str.length count return save.num1 save.num2}
FUNCTION {is.in.list}{
  'f :=
  %%%% saveing "s" and "t"
  s 'j :=
  f 's :=
  t 'f :=  
  list.string text.length$ 'str.length :=
  list.string 't :=
%  s text.length$ 'slen :=
  int   'save.num1 :=
  count 'save.num2 :=
  #1 'int :=
  #1 'count :=
  #0 'return :=
    
    { count str.length = not 
      #0 str.length = not
      and
    }
    {
       count #1 + 'count :=
       t int #1 substring$ "," =
        {
          t #1 int substring$ s "," * =
            {
               #1 'return :=
               str.length 'count :=
            }
            'skip$
           if$
          
          int #1 + 'int :=
           t int global.max$ substring$ 't :=
          #0 'int :=
        }
        'skip$
      if$	
      int #1 + 'int :=
    }
  while$

  save.num1 'int   :=
  save.num2 'count :=
  
  #0 return =
    { s t =
        {#1 'return :=}
        'skip$
      if$
    }
    'skip$
  if$
  %%%% returning original "s" and "t"
  j 's :=
  f 't :=  
  
  return		
}

INTEGERS {bibitem.count}

FUNCTION {print.count}
{ bibitem.count #1 + 'bibitem.count :=
  newline$
  "%%% " 
  bibitem.count int.to.str$ * write$
}
FUNCTION {output.bibitem}
{ print.count
  newline$
  "\bibitem"
  "nameyear" is.in.list
     {
       "[\protect\citeauthoryear{" * write$
           check.auth.edit.org write$ 
       "}{" write$ 
           check.year write$ 
       "}]" 
    }
    'skip$
  if$
  "alpha" is.in.list
     {
       "[" * write$
      label write$
      "]" 
    }
    'skip$
  if$

  "{" * write$  
  cite$ write$
  "}" write$

  newline$
  "" before.all 'output.state :=
}


FUNCTION {string.to.integer}
{ 't :=
  t text.length$ 'k :=
  #1 'char.num :=
  { t char.num #1 substring$ 's :=
     s is.num
     s "." =
     or 
     char.num k = not
     and
   }
   { char.num #1 + 'char.num := }
  while$
  char.num #1 - 'char.num :=
  t #1 char.num substring$   
}

 
FUNCTION {find.integer}
{ 't :=
  #0 'int :=
    { int not
      t empty$ not
      and
    }
    { t #1 #1 substring$ 's :=
      s is.num 
        {#1 'int :=}
        { t #2 global.max$ substring$ 't := }
      if$
    }
  while$
  int 
}

function{title.lowerwords}{
"a,an,and,of,the,for,in,to,over,from,on,or,so,than,that,this,as,but,with,by,at,down,up,upon,al,ale,aus,aux,d'Analyse,d'Analystes,d'Architecture,d'Etudes,d'Histoire,da,dans,de,degli,dei,del,"
"dell',dell'Accademia,dell'Istituto,dell'Universita,della,delle,dem,der,des,detta,di,die,din,dlia,do,du,e,eXpress,ed,ego,el,em,en,et,fur,i,iz,l'Academie,l'Age,l'Antiquite," *
"l'Approximation,l'Ecole,l'Histoire,l'I.S.U.P.,l'INSA,l'IREM,l'Indirizzo,l'Institut,l'Institute,l'UFR,l'Union,l'Universite,la,las,les,na,nella,per,po,si,sue,sur,ta,tes,und,van,voor,zu,zum,zur" *
}

FUNCTION {upercase.first.letters}{
  't :=
  "" 's :=
  #1 'int :=
  #1 'count :=
  list.string  'v :=
  "" 'b :=
  title.lowerwords 'list.string :=	

  t text.length$ 'slen :=
  
    {count slen = not }
    {t int #1 substring$ " " =
        {
          int #1 - 'int :=
          t #1 int substring$ 'b :=
          
          % if word not in title.lowerwords - uppercase first letter
          b is.in.list not
            {	b "l" change.case$ b =
                { b "u" change.case$ "t" change.case$ 'b := }
                'skip$
              if$
            }
            'skip$
          if$
          
          int #1 + 'int :=

          s b " " *  * 's :=
          int #1 + 'int :=
           t int global.max$ substring$ 't :=
          #0 'int :=
        }
        'skip$
      if$	
      int #1 + 'int :=
      count #1 + 'count :=
%			"count=" count int.to.str$ * " slen=" * slen int.to.str$ * top$
    }
  while$
  v 'list.string :=	
  % last word is "t" and need to check it too 
  s t
  t "l" change.case$ t =
    { "u" change.case$ "t" change.case$ }
    'skip$
  if$
  *
}


FUNCTION {format.title}
{ title empty$
    { "" }
    { title  
      "article" type$ =
      type$ "techreport" =
      type$ "inbook" =
      type$ "inproceedings" =
      type$ "incollection" =
      type$ "phdthesis" =
      type$ "mastersthesis" =
      or or or or or or
         {"t" change.case$}
         {	type$ "unpublished" =
           type$ "misc" =
           or
             'skip$
            'upercase.first.letters
          if$
        }
      if$
    }
  if$
}


FUNCTION {note.presented}
{	note #1 #9 substring$ "presented" = 
   note #1 #9 substring$ "Presented" = 
  or
}
 
FUNCTION {n.filter}
{ 't :=
  ""
  { t empty$ not }
  { t #1 #1 substring$ "," =
    t #1 #1 substring$ "\" =
    t #1 #1 substring$ "~" =
    or or
      { "" * 
        t #2 global.max$ substring$ 't := 
      }
      { t #1 #1 substring$ *
        t #2 global.max$ substring$ 't :=
      }
    if$
  }
  while$
}

FUNCTION {byear}
{ duplicate$ empty$
    { pop$ "" }
    {	't :=
       t text.length$ 'sk :=
      #5 sk =
        {	t #1 #4 substring$ 's :=
          t #5 #1 substring$ 'longest.label :=
          longest.label is.num not	
            {s "year" make.tag  
              "nameyear" is.in.list	
                {longest.label * }
                'skip$
              if$
            }
            {t "year" make.tag }
          if$
        }
        {	t "year" make.tag 
          "nameyear" is.in.list						
            {extra.label *}
            'skip$
          if$
        }
      if$
    }
  if$    
}

FUNCTION {format.date}
{ year empty$
    { "" }
    { year byear }
  if$
}

FUNCTION {parens}
{ "(" swap$ * ")" * }

FUNCTION {format.date.parens}
{ year empty$
    { "" }
    { year byear parens }
  if$
}

FUNCTION {format.month}{ 
  month empty$
    {""}
    {month sort.format.month "confdate" make.tag}
  if$
}

FUNCTION {formatpatent.date}
{ year empty$
    'skip$
    { month empty$
       { year }
       {format.month " " * year *}
      if$
    }
  if$
}

FUNCTION {month.year.date}
{ year empty$
    {""}
    { month empty$
        {year byear}
        { format.month " " * year byear * }
      if$
      type$ "inproceedings" =
        'skip$
        {"(" swap$ * ")" * }
      if$
    }
  if$
}

FUNCTION {tie.or.space.connect}
{ duplicate$ text.length$ #3 <
    { "~" }
    { " " }
  if$
  swap$ * *
}
FUNCTION {format.volume}
{ volume empty$
    { "book" type$ =
        {number empty$
          {""}
          {"vol. " number "seriesno" make.tag *}
          if$
        }
        {""} 
      if$
    }
    {"vol. " volume "seriesno" make.tag *}
  if$
}
FUNCTION {format.volume2}
{ volume empty$
    {""} 
    {"vol. " volume "seriesno" make.tag *}
  if$
}

FUNCTION {format.art.vol}
{ 
 volume empty$
  {""}
  {volume n.filter "volume" make.tag}
  if$
  number empty$
    'skip$
    { "(" number "issue" make.tag * ")" * * }
  if$
}

FUNCTION {format.series}
{ series empty$
  'skip$ 
    {series "sertitle" make.tag}
  if$
}

FUNCTION {format.edition}
{ edition empty$
    { "" }
    { "" 'v :=
      "" 'l :=    
      "" 'f :=    
      edition "l" change.case$ 's :=
         "1" s =
         "first" s =  			
         or
           {
             "1" 'v :=
            "st" 'l :=  
           }
           {
             "2" s =
             "second" s =  			
             or
               {
                 "2" 'v :=
                "nd" 'l :=  
               }
               {
                 "3" s =
                 "third" s =  			
                 or
                   {
                     "3" 'v :=
                    "rd" 'l :=  
                   }
                   {
                     "4" s =
                     "fourth" s =  			
                     or
                       {
                         "4" 'v :=
                        "th" 'l :=  
                       }
                       {
                         "5" s =
                         "fifth" s =  			
                         or
                           {
                             "5" 'v :=
                            "th" 'l :=  
                           }
                           {
                             "6" s =
                             "sixth" s =  			
                             or
                               {
                                 "6" 'v :=
                                "th" 'l :=  
                               }
                               {
                                 "7" s =
                                 "seventh" s =  			
                                 or
                                   {
                                     "7" 'v :=
                                    "th" 'l :=  
                                   }
                                   {
                                     "8" s =
                                     "eighth" s =  			
                                     or
                                       {
                                         "8" 'v :=
                                        "th" 'l :=  
                                       }
                                       {
                                         "9" s =
                                         "nineth" s =  			
                                         or
                                           {
                                             "9" 'v :=
                                            "th" 'l :=  
                                           }
                                           {
                                               edition "t" change.case$ 'f :=
                                           }
                                         if$	 
                                       }
                                     if$	 
                                   }
                                 if$	 
                               }
                             if$	 
                           }
                         if$	 
                       }
                     if$	 
                   }
                 if$	 
               }
             if$	 
           }
         if$	 
        #0 bother =		
           {	f "" =
               { v l *	'f :=}
               'skip$
             if$
           }
           {	f "" =
               { "\bedition{" v * "}" * l *	'f :=}
               { "\bedition{" f * "}" *	'f :=}
             if$
           }
       if$
       f " edn." *
    }
  if$
}
FUNCTION {format.isbn}
{ isbn empty$
    { "" }
    { isbn "isbn" make.tag}	
  if$
}

INTEGERS {default.info}


FUNCTION {multi.page.check}
{ 't :=
  #0 'multiresult :=
  "" 'l :=

    {t empty$ not}
    { t #1 #1 substring$  's :=
      
      s is.num not
        { "" l = not
            {t find.integer 
                {#1 'multiresult := }
                {#0 'multiresult := }
                if$
                "" 't :=
             }
             {
             t #2 global.max$ substring$ 't :=
             }
           if$	
        }
        { l  s * 'l :=
          t #2 global.max$ substring$ 't := 
        }
      if$
    }
  while$
  multiresult 
}
FUNCTION {clearpage}
{ 't :=
  "" 's :=
  "" 'l :=
  
    { t empty$ not }
    {
      t #1 #1 substring$ 's :=
      s is.num not
        'skip$
        {	l  s * 'l := 	}
      if$
      t #2 global.max$ substring$ 't :=
    }
  while$
  l
       
}
FUNCTION {do.pages}
{'t :=
  "" 'j :=
  "" 'v :=
    {t empty$ not}
    { t #1 #1 substring$  's :=
      s is.num not
      s "," = not
      and
        { "" j = 
             {
               t #2 global.max$ substring$ 't :=
             }
            {t find.integer 
                { t clearpage  'v := }
                'skip$
                if$
                "" 't := 
             }
           if$	
        }
        {	j  s * 'j :=
            t #2 global.max$ substring$ 't := 
        }
      if$
    }
  while$
  j clearpage  'j :=
  j  "fpage" make.tag 
  "cnd" is.in.list
    'skip$
    {"--"  * v "lpage" make.tag *}
  if$
}


FUNCTION {format.pages}
{ pages empty$
    { "" }
    { pages multi.page.check
        {type$ "article" =
          {""}
          {"cnd" is.in.list
             {"p. "}
             {"pp. "}
            if$ 
          } 
         if$	
          pages do.pages *
        }
        {type$ "article" =
          {""}
          {"p. "} 
         if$	
          pages clearpage "fpage" make.tag *
        }

      if$
    }
  if$
}

FUNCTION {replace.tilde}
{ 't :=
  ""
    { t empty$ not }
    { t #1 #1 substring$ "~" =
            {   { t #1 #1 substring$ "~" = }
                { "\texttildelow " *
                  t #2 global.max$ substring$ 't :=
                }
              while$
            }
        { t #1 #1 substring$ *
          t #2 global.max$ substring$ 't :=
        }
      if$
    }
  while$
}


FUNCTION {format.url}
{ url empty$
    'skip$
    { type$ "article" =
        'skip$	
        {	#0 bother =
            { "\url{" }
             { "\burl{" }
          if$
          url replace.tilde * "}" * 
          output	
        }
      if$
       
       urldate empty$
           'skip$
         { "Accessed " urldate * output }
       if$
    }	
  if$
}

FUNCTION {publisher.month.pages}{
  publisher empty$ series empty$ and
     { address empty$
         'skip$
         'new.sentence
       if$
      format.pub.address
       
      pages empty$
        'skip$
         {insert.comma}
      if$  
       format.pages output
     
     }
     {
      pages empty$
          'skip$
          {insert.comma}
      if$  
      format.pages output
      publisher empty$
         'skip$
        {new.sentence}
      if$
      format.pub.address
     }
  if$
}

function{process.doi}{
  doi 't :=
    "" 'b :=
    #1 'int :=
% 	"doi =" t * top$

  t text.length$ 'slen :=
  
    {int slen = not }
    {t int #3 substring$ "10." =
        {
          t int #1 - #1 substring$ 'b :=
          b "" = 
            {"a" 'b :=} % if b is empty need to set a letter
            'skip$
          if$
            
          b is.num not
            {
               t int slen int - #1 + substring$ 't :=
              slen #1 - 'int := 
            }
            'skip$
          if$
          
        }
        'skip$
      if$	
      int #1 + 'int :=
    }
  while$
  t
}

FUNCTION {format.doi}
{ doi empty$
  {""}
  { 
     "nodoi" is.in.list
      {""}
      {"doi:\doiurl{" process.doi * "}" * }
     if$
  }
  if$
}

FUNCTION {format.in.ed.booktitle}
{ booktitle empty$
    {#1 bother =
     "cnd" is.in.list not
     and
          { editor empty$
                'skip$
                { "In: " output write$ format.editors }
            if$
          }
          'skip$
      if$
    }
    { editor empty$
        { "In: " booktitle upercase.first.letters "btitle" make.tag * output}
        { "In: " output write$ format.editors  "" %%% pushing empty string to the empty stack
           booktitle upercase.first.letters "btitle" make.tag  output 
        }
      if$
    }
    
  if$
}

FUNCTION {format.in.ed}
{ title empty$
    'skip$
    { editor empty$
         {  title "btitle" make.tag output}
         { author empty$
          {  format.editors
              stupid.colon
              %format.date output
              title "btitle" make.tag output
          }
          { "In: " output write$ format.editors  "" %%% pushing empty string to the empty stack
            title "btitle" make.tag output
          }
        if$
        }
     if$
     }
  if$
}

FUNCTION {format.tr.number}
{ type empty$
    { "Technical Report" }
    'type
  if$
  number empty$
    { "t" change.case$ }
    { number tie.or.space.connect }
  if$
}

FUNCTION {patent.number}
{ number empty$
    'skip$
    { number }
  if$
}
INTEGERS { len }

FUNCTION {chop.word}
{ 's :=
  'len :=
  s #1 len substring$ =
    { s len #1 + global.max$ substring$ }
    's
  if$
}   
 
FUNCTION {format.inpres}
{ "l" change.case$ 't :=
  "in press: " #10
  "in press. " #10
  "in press " #9 t chop.word
  chop.word
  chop.word
  #1 global.max$ substring$
}

FUNCTION {bcomment.note}
{	note empty$
    'skip$
     {note format.inpres "comment" make.tag output}
   if$
}

FUNCTION {empty.misc.check}
{ author empty$ title empty$ howpublished empty$
  month empty$ year empty$ note empty$
  and and and and and
    { "all relevant fields are empty in " cite$ * warning$ }
    'skip$
  if$
}

FUNCTION {format.thesis.type}
{ type empty$
    'skip$
    { pop$
      type "t" change.case$
    }
  if$
}

FUNCTION {format.chapter.and.note}
{	note empty$ chapter empty$ organization empty$ and and
    'skip$
    {	chapter empty$
      "notnumber" last.label =
      or
        {organization empty$
            {	note "comment" make.tag output }
            {	note empty$
                { organization "comment" make.tag output }
                { organization ". " * note * "comment" make.tag output }
             if$
            }
         if$
        }
        {	note empty$
            {	"Chap. "  chapter * "comment" make.tag output}
            {	type empty$
                { "Chap. " }
                { type "t" change.case$ "Section" = 
                     {	"Sect. " }
                    { "Chap. " }
                  if$	
                }
              if$
              chapter * ". " * note * "comment" make.tag  output
            }
          if$
        }
      if$
    }
  if$		
}

FUNCTION {item.end}
{	chapter empty$
  type$ "unpublished" = not 
  type$ "misc" = not 
  and	and
    {	new.sentence
      format.doi  output
    }
    'skip$
  if$
  
  type$ "unpublished" =
  type$ "misc" =
  or
    {	note empty$
        'skip$
        {note.presented
            'skip$
            {new.sentence note output}
         if$		
        }
      if$	
      format.date.parens output
    }
    { new.sentence
      type$ "proceedings" =
        {	author empty$ editor empty$ and
            'bcomment.note
             'format.chapter.and.note 
           if$	
        }
         'format.chapter.and.note 
       if$		
    }
  if$
  list.string  'v :=
  default.list  'list.string :=

  type$ ".isbn" * is.in.list
  "cnd" is.in.list 
    or
    {
     new.sentence 
       format.isbn output
    }
     'skip$
  if$
  new.sentence
  eprint empty$
    'skip$
    {"\arxivurl{" eprint * "}" * output}
  if$ 
  chapter empty$
  type$ "unpublished" = not 
  type$ "misc" = not 
  and	and
    'skip$
    {	new.sentence
      format.doi  output
    }
  if$
  new.sentence
  format.url 
  v 'list.string :=
  fin.entry
}
FUNCTION {insert.element}
{	#0 bother =
    {	element "{botherref}" * write$ newline$}
    {
      type$ "article" =
        {element "{barticle}" * write$ newline$}
        'skip$
      if$
      type$ "book" =
      type$ "proceedings" =
      type$ "manual" =
      type$ "booklet" =
      or or or 
        {element "{bbook}" * write$ newline$}
        'skip$
      if$
      
      type$ "inbook" =
        {	"notnumber" last.label =
            {element "{bchapter}" * write$ newline$}
            {element "{bbook}" * write$ newline$}
          if$	
        }
        'skip$
      if$
      
       type$ "incollection" =
       type$ "inproceedings" =
       type$ "conference" =
       or or
        {element "{bchapter}" * write$ newline$}
        'skip$
      if$
     }
  if$
}
FUNCTION {end.element}
{ "\end" 'element :=
  item.end
  insert.element
  "\endbibitem" write$ newline$
}
FUNCTION {begin.element}
{ "\begin" 'element :=
  insert.element
}
function {set.options}{
  options empty$
    'skip$
    {options 'list.string :=}
  if$	
}

FUNCTION {settings}
{}

FUNCTION {article}
{ output.bibitem
  author empty$
  institution empty$ 
  editor empty$
  and and
  journal empty$ 
  or
  year empty$ 
   or 
  %	above tagging rule means:
  % nead: (volume & (pages or number) ) or (doi [without volume, pages and number])
    volume empty$ not  
    pages empty$ not bnumber empty$ not or
    and
    
    volume empty$ pages empty$ bnumber empty$ and and
    doi empty$ not and  
    or
    not
  or
    {#0 'bother :=} 
     {#1 'bother :=}				 		  
  if$	
  begin.element
  author empty$
    { editor empty$
        'skip$
         {format.editors stupid.colon}
      if$
    }
    { format.authors stupid.colon}
  if$
  "cnd" is.in.list
    {
      journal empty$
        {format.title "atitle" make.tag "title" output.check}
         {journal "jtitle" make.tag  output}
      if$
    }
    {
      format.title "atitle" make.tag "title" output.check
      journal empty$
        'skip$
        {new.sentence journal "jtitle" make.tag  output}
      if$
    }
  if$	
   format.art.vol output
  pages empty$
    'skip$
    {insert.comma}
  if$
   format.pages output
   format.date.parens output
  end.element
}


FUNCTION {patent}
{ output.bibitem
  #0 'bother :=
  begin.element
  author empty$
  'skip$
    {format.authors stupid.colon}
  if$
  format.title "title" output.check
  add.period$
  patent.number output
  insert.comma
   formatpatent.date output
  end.element
}

FUNCTION { other } { patent }

FUNCTION {book}
{ output.bibitem
  author empty$
  institution empty$ 
  organization empty$ 
  editor empty$
  and and and
  title empty$ 
   year empty$ 
   or or
    {#0 'bother :=} 
    {
      publisher empty$ address empty$ not and
        {#0 'bother :=} 
        {#1 'bother :=}
      if$
    } 
  if$	
  begin.element
  author empty$
    { editor empty$
      'skip$
       {format.editors stupid.colon}
      if$
    }
    { format.authors stupid.colon}
  if$
  format.title "btitle" make.tag "title" output.check
   series empty$
    {
      format.volume output
      insert.comma 
      format.edition output
    }
    {	edition empty$
        'skip$
        'insert.comma
      if$
      format.edition output
      new.sentence
      format.series output
      insert.comma 
      format.volume output
    }
  if$ 
  publisher.month.pages
  format.date.parens output
  end.element      
}

FUNCTION {booklet}
{output.bibitem
  author empty$
  title empty$ 
   year empty$ 
   howpublished empty$  
   or or or
    {#0 'bother :=} 
    {#1 'bother :=} 
  if$	

  begin.element
  author empty$
    'skip$
    {format.authors stupid.colon}
  if$
  format.title "btitle" make.tag "title" output.check
  address empty$ publisher empty$ howpublished empty$ and and
    'skip$
    'new.sentence
  if$
  format.pub.address
  format.date.parens output
  end.element
}

FUNCTION {misc}
{output.bibitem
   #0 'bother :=
  begin.element
  author empty$
    'skip$
    {format.authors stupid.colon}
  if$
  format.title "btitle" make.tag "title" output.check
  address empty$ publisher empty$ howpublished empty$ and and
    'skip$
    'new.sentence
  if$
  format.pub.address
  end.element
}

FUNCTION {inbook}
{ output.bibitem
   author empty$
  institution empty$ 
  organization empty$ 
  editor empty$
  and and and
  title empty$ 
   year empty$ 
   or or 
    {#0 'bother :=} 
    {
      publisher empty$ address empty$ not and
        {#0 'bother :=} 
        {#1 'bother :=}
      if$
    } 
  if$	

  chapter empty$
    {	"" 'last.label :=}
      {	chapter string.to.integer empty$ author empty$ not and
          {	"notnumber" 'last.label :=}
          {	"" 'last.label :=}
        if$
      }
    if$
  
  begin.element
   author empty$
    'skip$
    {format.authors stupid.colon}
  if$ 
  "notnumber" last.label =
    {	chapter "ctitle" make.tag output
      add.period$
    }
    'skip$
  if$
  format.in.ed 
  series empty$
    {
      insert.comma 
      format.volume output
      insert.comma 
      format.edition output
      new.sentence
    }
    {
      insert.comma
      format.edition output
      new.sentence
      format.series output
      volume empty$
        'skip$
         'insert.comma
      if$  
      format.volume output
    }
  if$ 
  publisher.month.pages
  publisher empty$ address empty$ edition empty$ series empty$ pages empty$ volume empty$ and and and and and
    'insert.comma
    'skip$
  if$
  format.date.parens output
  end.element
}
FUNCTION {incollection}
{ output.bibitem
  author empty$
  institution empty$ 
  and
  booktitle empty$ 
  title empty$
  year empty$ 
   or or or
    {#0 'bother :=} 
    {
      publisher empty$ address empty$ not and
        {#0 'bother :=} 
        {#1 'bother :=}
      if$
    } 
  if$	
  begin.element
  author empty$
    'skip$	
    {format.authors stupid.colon}
  if$		 

  "cnd" is.in.list
    {
      booktitle empty$ title empty$ not and
         {
          format.title "ctitle" make.tag "title" output.check
          new.sentence
        }
        'skip$
      if$		 
    }
    {
      format.title "ctitle" make.tag "title" output.check  
       title empty$
         'skip$
          {new.sentence}
       if$
    }
  if$
  format.in.ed.booktitle 
  series empty$
     {
        format.volume output
        insert.comma 
        format.edition output
     }
     {
        edition empty$
          'skip$
           {	insert.comma
              format.edition output
          } 
        if$
        new.sentence 
        format.series output
        insert.comma
        format.volume output
     }
  if$ 
   publisher.month.pages
  format.date.parens output
  end.element
}

FUNCTION {inproceedings}
{ output.bibitem
  author empty$
  institution empty$ 
  and
  title empty$ 
  year empty$ 
   or or
    {#0 'bother :=} 
    {#1 'bother :=}
  if$	
  begin.element
  author empty$
  'skip$
    {format.authors stupid.colon}
  if$
  
  "cnd" is.in.list
    {
      booktitle empty$ title empty$ not and
         {
          format.title "ctitle" make.tag "title" output.check
          new.sentence
        }
        'skip$
      if$		 
    }
    {
      format.title "ctitle" make.tag "title" output.check
       title empty$ booktitle empty$ not and
        'skip$
        {new.sentence}
      if$
    }
  if$
 
  format.in.ed.booktitle 
  series empty$
      'skip$
      {new.sentence format.series output}
  if$  
  volume empty$ address empty$ publisher empty$ and and 
    'skip$
    'insert.comma
  if$
  format.volume output
  publisher.month.pages
  format.date.parens output
  end.element
}

FUNCTION {conference} { inproceedings }

FUNCTION {manual}
{	output.bibitem
  author empty$
  organization empty$ 
  title empty$ 
   year empty$ 
   address  empty$ 
   or or or or
    {#0 'bother :=} 
    {#1 'bother :=} 
  if$	
  begin.element

  author empty$
    { organization empty$
        'skip$
        { organization "publisher" make.tag output.nonnull
          stupid.colon% add.period$
        }
      if$
    }
    { format.authors stupid.colon}
  if$
  title empty$
    'skip$
    {format.title "btitle" make.tag output}
   if$
  edition empty$
     {new.sentence}
     {insert.comma}
  if$
  format.edition output
  edition empty$
    'skip$
     {new.sentence}
  if$
   author empty$ organization empty$
   or
    'skip$
    { organization "publisher" make.tag output.nonnull
      insert.comma
    }
  if$
  address empty$
    'skip$
     {addres

bmcart-biblio.sty11 KB

%%
%% LaTeX 2e packagee for the processing of LaTeX2e files
%% for the BioMed Central
%% Additional commands for the processing of structured reference list
%%
%% Macros written by Vytas Statulevicius, VTeX, Lithuania
%% for the BioMed Central
%% Please submit bugs or your comments to vytas@vtex.lt
%%
%% The original distribution is located at:
%% http://support.e-publications.org/bmc
%%
%% This class file loads standart "article.cls" with appropriate 
%% settings and then redefines layout according to BMC style
%% A lot of efforts are done for the possibility of extraction of 
%% information from the LaTeX file
%%
%% You are free to use this style class as you see fit, provided 
%% that you do not make changes to the file. 
%% If you DO make changes, you are required to rename this file.
%%
%% It may be distributed under the terms of the LaTeX Project Public
%% License, as described in lppl.txt in the base LaTeX distribution.
%% Either version 1.0 or, at your option, any later version.
%%
%% \CharacterTable
%%  {Upper-case    \A\B\C\D\E\F\G\H\I\J\K\L\M\N\O\P\Q\R\S\T\U\V\W\X\Y\Z
%%   Lower-case    \a\b\c\d\e\f\g\h\i\j\k\l\m\n\o\p\q\r\s\t\u\v\w\x\y\z
%%   Digits        \0\1\2\3\4\5\6\7\8\9
%%   Exclamation   \!     Double quote  \"     Hash (number) \#
%%   Dollar        \$     Percent       \%     Ampersand     \&
%%   Acute accent  \'     Left paren    \(     Right paren   \)
%%   Asterisk      \*     Plus          \+     Comma         \,
%%   Minus         \-     Point         \.     Solidus       \/
%%   Colon         \:     Semicolon     \;     Less than     \<
%%   Equals        \=     Greater than  \>     Question mark \?
%%   Commercial at \@     Left bracket  \[     Backslash     \\
%%   Right bracket \]     Circumflex    \^     Underscore    \_
%%   Grave accent  \`     Left brace    \{     Vertical bar  \|
%%   Right brace   \}     Tilde         \~}
%%
%%
%% Bug fixes and changes:
%% at end of file


\def\bmc@common@bibl@date{2012/03/06}

\NeedsTeXFormat{LaTeX2e}
\ProvidesPackage{bmcart-biblio}[\bmc@common@bibl@date
                                  additional macros for the bibliography tagging A++ XML DTD (VS)]

% Default bibliography style:
\def\bibliography@style{10}
\def\bibliography@style@name{BMC Reference Style}
\def\bibliography@key{bmc}

% vykdoma tik pirma opcija (t.y. tai leidzia "permusti" opcija per
% \documentclass[foo,..]

\def\only@first#1{\@ifundefined{o@f@}{\def\o@f@{}#1}{}}

\DeclareOption{undef}    {\only@first{\def\bibliography@style{0}\def\bibliography@key{undef}
                          \def\bibliography@style@name{undefined}}} 
\DeclareOption{basic}    {\only@first{\def\bibliography@style{1}\def\bibliography@key{basic}
                          \def\bibliography@style@name{Basic Springer}}} 
\DeclareOption{chemistry}{\only@first{\def\bibliography@style{2}\def\bibliography@key{chemistry}
                          \def\bibliography@style@name{Chemistry}}} 
\DeclareOption{mathphys} {\only@first{\def\bibliography@style{3}\def\bibliography@key{mathphys}
                          \def\bibliography@style@name{Math and Physical Sciences}}} 
\DeclareOption{aps}      {\only@first{\def\bibliography@style{4}\def\bibliography@key{aps}
                          \def\bibliography@style@name{American Physical Society}}} 
\DeclareOption{cs}       {\only@first{\def\bibliography@style{5}\def\bibliography@key{cs}
                          \def\bibliography@style@name{Computer Science}}}
\DeclareOption{vancouver}{\only@first{\def\bibliography@style{6}\def\bibliography@key{vancouver}
                          \def\bibliography@style@name{Vancouver}}}
\DeclareOption{apa}      {\only@first{\def\bibliography@style{7}\def\bibliography@key{apa}
                          \def\bibliography@style@name{APA}}}
\DeclareOption{chicago}  {\only@first{\def\bibliography@style{8}\def\bibliography@key{chicago}
                          \def\bibliography@style@name{Chicago}}}
\DeclareOption{ams}      {\only@first{\def\bibliography@style{9}\def\bibliography@key{ams}
                          \def\bibliography@style@name{AMS}}}
\DeclareOption{bmc}      {\only@first{\def\bibliography@style{10}\def\bibliography@key{bmc}
                          \def\bibliography@style@name{BMC Reference Style}}}

\ProcessOptions*


%%% Common macros:
\def\xml@attr{\@ifnextchar[{\get@attr}{\get@attr[]}}
\def\get@attr[#1]#2{#2}

\let\betal@style\relax

\def\common@pub@types{%
  \let\binstitute\@firstofone%
  \def\betal{{\betal@style et al.}}%
  \let\byear\@firstofone%  
  \let\bfpage\@firstofone%
  \let\blpage\@firstofone%
  \let\binterref\xml@attr%
  \def\burl##1{{\csname burl@style\endcsname\surl{##1}}}
  \let\bcomment\@firstofone%
  \let\oauthor\@firstofone%
  \csname common@pub@types@hook\endcsname%
}

% Setting a "style" for a command:
% \set@bibl@cmd{bvolume}  == \def\bvolume#1{{\bvolume@style #1}}

\def\set@bibl@cmd#1{\expandafter\def\csname #1\endcsname##1{{\csname #1@style\endcsname##1}}}


\AtBeginDocument{\let\doiurlchapter\doiurl}

%%% BibEditorName 

\def\xml@beditor#1{%
  \let\bprefix\@firstofone%
  \let\binits\@firstofone%
  \let\bsnm\@firstofone%
  \let\bparticle\@firstofone%
  \let\bsuffix\@firstofone%
  \let\bdegs\@firstofone%
#1}

%%% BibAuthorName

\def\xml@bauthor#1{%
  \let\bprefix\@firstofone%
  \let\binits\@firstofone%
%  \let\bsnm\@firstofone%
  \def\bsnm##1{{\csname bsnm@style\endcsname##1}}%
  \let\bparticle\@firstofone%
  \let\bsuffix\@firstofone%
  \let\bdegs\@firstofone%
#1}


%%% bsertitle

\def\xml@bsertitle{\@ifnextchar[{\@xml@bsertitle}{\@xml@bsertitle[]}}

\def\@xml@bsertitle[#1]#2{{\csname bsertitle@style\endcsname #2}}%

\def\xml@batitle{\@ifnextchar[{\@xml@batitle}{\@xml@batitle[]}}
\def\@xml@batitle[#1]#2{{\csname batitle@style\endcsname #2}}%

\def\xml@bctitle{\@ifnextchar[{\@xml@bctitle}{\@xml@bctitle[]}}
\def\@xml@bctitle[#1]#2{{\csname bctitle@style\endcsname #2}}%

\def\xml@bbtitle{\@ifnextchar[{\@xml@bbtitle}{\@xml@bbtitle[]}}
\def\@xml@bbtitle[#1]#2{{\csname bbtitle@style\endcsname #2}}%



%%% BibArticle
% \begin{barticle}
% ...
% \end{barticle}

\def\barticle{%
  \common@pub@types%
  \let\bauthor\xml@bauthor%
  \let\batitle\xml@attr%
  \set@bibl@cmd{bjtitle}%
  \set@bibl@cmd{bvolume}%
  \set@bibl@cmd{bissue}%
  \let\bnumber\@firstofone%
}
\def\endbarticle{}


%%% BibIssue
% \begin{bissue}
% ...
% \end{bissue}

\def\bissue{%
  \common@pub@types%
  \let\bauthor\xml@bauthor%
  \set@bibl@cmd{bjtitle}%
  \set@bibl@cmd{bvolume}%
  \set@bibl@cmd{bissue}%
  \set@bibl@cmd{bmonth}%
}
\def\endbissue{}


%%% BibChapter
% \begin{bchapter}
% ...
% \end{bchapter}

\def\bchapter{%
  \common@pub@types%
  \let\bauthor\xml@bauthor%
  \let\bctitle\xml@attr% 
  \let\beditor\xml@beditor% 
  \let\binstitutionaled\@firstofone%
  \def\beds{eds.}%
  \let\bbtitle\xml@bbtitle
  \let\bedition\xml@attr% 
  \set@bibl@cmd{bconfname}%
  \set@bibl@cmd{bconflocation}%
  \set@bibl@cmd{bconfdate}%
  \let\bsertitle\xml@bsertitle% 
  \set@bibl@cmd{bseriesno}%
  \let\bpublisher\@firstofone% 
  \let\blocation\@firstofone%
  \let\bisbn\@firstofone%
}

\def\endbchapter{}

%%% BibUnstructured
% \begin{botherref}
% ...
% \end{botherref}

\def\botherref{\let\binterref\xml@attr\let\oauthor\xml@bauthor\let\bauthor\xml@bauthor}
\def\endbotherref{}


%%% BibBook
% \begin{bbook}
% ...
% \end{bbook}

\def\bbook{%
  \common@pub@types%
  \let\bauthor\xml@bauthor% 
  \let\beditor\xml@beditor% 
  \let\binstitutionaled\@firstofone%
  \def\beds{eds.}%
  \let\bbtitle\xml@bbtitle
  \let\bedition\xml@attr% 
  \let\bconfname\@firstofone%
  \let\bconflocation\@firstofone%
  \let\bconfdate\@firstofone%
  \let\bsertitle\xml@bsertitle%
  \set@bibl@cmd{bseriesno}%
  \let\bpublisher\@firstofone%
  \let\blocation\@firstofone%
  \let\bisbn\@firstofone%
}%


\def\endbbook{}

%%%
\let\endbibitem\relax

%%%%%% vancouver  puslapi nr. formavimas
%% 17-19 -> 17-9
%% 17-21 -> 17-21
%% 1234-1345 -> 345

\def\vcr@bfpage#1{%
  #1\nobreak%
  \test@if@number{#1}%
  \let\blpage\@firstofone%
  \if@page@isnumber\ifnum#1>9\def\@vcr@bfpage{#1}\let\blpage\fmt@blpage\fi\fi}


\def\fmt@blpage#1{%
  \test@if@number{#1}%
  \if@page@isnumber%
    \ifnum\@vcr@bfpage<#1%
       \vcr@blpage{#1}% 
    \else%
       #1\@latex@error{sprbibl: [\cur@bibitem] \string\bfpage\space > \string\blpage!}{??}%
    \fi%
  \else%
    #1%
  \fi}

% algoritmas
% a) bfpage ir blpage daliname is 10 
% b) if bfpage=blpage goto d
% c) if bfpage<10 end else goto a
% d) x:= blpage - int(blpage/10^i)*10^1

\def\vcr@blpage#1{%
   \@tempcnta=\@vcr@bfpage%
   \@tempcntb=#1%
   \@tempcntc=1%
   \def\control@cnt{1}%
   \@whilenum\control@cnt>0\do{%
     \divide\@tempcnta by10%
     \divide\@tempcntb by10%
     \multiply\@tempcntc by10%
     \ifnum\@tempcnta=\@tempcntb\def\control@cnt{0}\@tempswatrue%
     \else%
       \ifnum\@tempcnta<10\relax\def\control@cnt{0}\@tempswafalse\fi%
     \fi}%
   \if@tempswa%
     \@tempcnta=#1%
     \@tempcntb=#1%
     \divide\@tempcntb by\@tempcntc%
     \multiply\@tempcntb by\@tempcntc%
     \advance\@tempcnta by-\@tempcntb%
     \the\@tempcnta%
   \else%
     #1%
   \fi}%

\newif\if@page@isnumber 

\def\test@if@number#1{%
  \@page@isnumberfalse% 
  \setbox\@tempboxa=\hbox{\@tempcnta=0#1\relax\ignorespaces}%
  \ifdim\wd\@tempboxa>\z@\else\@page@isnumbertrue\fi}

%%%%%% Set bibliography styles:

\ifcase\bibliography@style\relax
  \message{^^J Reference style: \bibliography@style@name^^J}%
\or % basic
  \message{^^J Reference style: \bibliography@style@name^^J}%
  \def\common@pub@types@hook{\def\betal{{\betal@style et al}}}%
\or % chemistry
  \message{^^J Reference style: \bibliography@style@name^^J}%
\or % mathphys
  \message{^^J Reference style: \bibliography@style@name^^J}%
  \setattribute{bvolume}{style}{\bfseries}
\or % aps
  \message{^^J Reference style: \bibliography@style@name^^J}%
  \setattribute{bvolume}{style}{\bfseries}
  \setattribute{bbtitle}{style}{\itshape}
\or % cs
  \message{^^J Reference style: \bibliography@style@name^^J}%
  \setattribute{bvolume}{style}{\bfseries}
\or % vancouver
  \message{^^J Reference style: \bibliography@style@name^^J}%
  \def\common@pub@types@hook{\let\bfpage\vcr@bfpage}
\or % apa
  \message{^^J Reference style: \bibliography@style@name^^J}%
  \setattribute{bjtitle}{style}{\itshape}
  \setattribute{bvolume}{style}{\itshape}
  \setattribute{bbtitle}{style}{\itshape}
  \setattribute{bsertitle}{style}{\itshape}
  \setattribute{bseriesno}{style}{\itshape}
\or % chicago
  \message{^^J Reference style: \bibliography@style@name^^J}%
  \setattribute{bbtitle}  {style}{\itshape}
  \setattribute{bjtitle}  {style}{\itshape}
  \setattribute{bsertitle}{style}{\itshape}
\or % ams
  \message{^^J Reference style: \bibliography@style@name^^J}%
  \setattribute{batitle}{style}{\itshape}%  
  \setattribute{bctitle}{style}{\itshape}%  
  \g@addto@macro\barticle{\let\batitle\xml@batitle}%
  \setattribute{bvolume}{style}{\bfseries}%
  \setattribute{bseriesno}{style}{\bfseries}%
  \g@addto@macro\bbook{\setattribute{bbtitle}{style}{\itshape}}%
  \g@addto@macro\bchapter{\let\bctitle\xml@bctitle%
  \setattribute{bbtitle}{style}{\upshape}% 
  }%
\or % bmc
  \message{^^J Reference style: \bibliography@style@name^^J}%
  \setattribute{bvolume}{style}{\bfseries}%
  \setattribute{batitle}{style}{\bfseries\mathversion{bold}}%
  \g@addto@macro\barticle{\let\batitle\xml@batitle}%
  \setattribute{bjtitle}{style}{\itshape}%
  \setattribute{bbtitle}{style}{\itshape}%
  \setattribute{bsertitle}{style}{\itshape}
  \setattribute{bctitle}{style}{\bfseries\mathversion{bold}}%
  \g@addto@macro\bchapter{\let\bctitle\xml@bctitle}%
\fi

\endinput

bmcart.cls54 KB

%%
%% LaTeX 2e class file for the processing of LaTeX2e files
%% for the BioMed Central
%%
%% Macros written by Vytas Statulevicius, VTeX, Lithuania
%% for the BioMed Central
%% Please submit bugs or your comments to vytas@vtex.lt
%%
%% The original distribution is located at:
%% http://www.biomedcentral.com/authors/tex
%%
%% This class file loads standart "article.cls" with appropriate 
%% settings and then redefines layout according to BMC style
%% A lot of efforts are done for the possibility of extraction of 
%% information from the LaTeX file
%%
%% You are free to use this style class as you see fit, provided 
%% that you do not make changes to the file. 
%% If you DO make changes, you are required to rename this file.
%%
%% It may be distributed under the terms of the LaTeX Project Public
%% License, as described in lppl.txt in the base LaTeX distribution.
%% Either version 1.0 or, at your option, any later version.
%%
%% \CharacterTable
%%  {Upper-case    \A\B\C\D\E\F\G\H\I\J\K\L\M\N\O\P\Q\R\S\T\U\V\W\X\Y\Z
%%   Lower-case    \a\b\c\d\e\f\g\h\i\j\k\l\m\n\o\p\q\r\s\t\u\v\w\x\y\z
%%   Digits        \0\1\2\3\4\5\6\7\8\9
%%   Exclamation   \!     Double quote  \"     Hash (number) \#
%%   Dollar        \$     Percent       \%     Ampersand     \&
%%   Acute accent  \'     Left paren    \(     Right paren   \)
%%   Asterisk      \*     Plus          \+     Comma         \,
%%   Minus         \-     Point         \.     Solidus       \/
%%   Colon         \:     Semicolon     \;     Less than     \<
%%   Equals        \=     Greater than  \>     Question mark \?
%%   Commercial at \@     Left bracket  \[     Backslash     \\
%%   Right bracket \]     Circumflex    \^     Underscore    \_
%%   Grave accent  \`     Left brace    \{     Vertical bar  \|
%%   Right brace   \}     Tilde         \~}
%%
%%
%% Bug fixes and changes:
%% at end of file

\def\bmcart@name{bmcart.cls}
\def\bmcart@version{2014/01/24}

\NeedsTeXFormat{LaTeX2e}

\ProvidesClass{bmcart}
   [\bmcart@version BioMed Central class (VS)]

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% General options:

% Print id line at bottom of the page:
\DeclareOption{noinfoline}{\AtBeginDocument{\let\info@line\@empty}}
\DeclareOption{infoline}  {\AtBeginDocument{\let\info@line\infoline@text}}

% Put lines numbers in margins
\newif\ifnumberlines@ \numberlines@false
\DeclareOption{linenumbers}{\numberlines@true}
\DeclareOption{nolinenumbers}{\numberlines@false}

% Spacing
\DeclareOption{doublespacing}{\AtBeginDocument{\renewcommand{\baselinestretch}{1.4}\large\normalsize}}
\DeclareOption{singlespacing}{\AtBeginDocument{\renewcommand{\baselinestretch}{1.0}\large\normalsize}}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% Loading standart "article" class

\PassOptionsToClass{twoside}{article}
\PassOptionsToPackage{fleqn}{amsmath}
\PassOptionsToPackage{sort&compress,numbers}{natbib}
\PassOptionsToPackage{colorlinks,citecolor=blue,urlcolor=blue,linkcolor=blue,pagecolor=blue}{hyperref}

\DeclareOption*{\PassOptionsToClass{\CurrentOption}{article}}
\ProcessOptions*

\LoadClass{article}

%%% start of "vsfleqn2.sty"
\newdimen\mathindent
\AtEndOfClass{\mathindent\leftmargini}
%
\def\mathtrivlist{\parsep\parskip\topsep\abovedisplayskip
  \ifnum\@listdepth>0 \advance\mathindent by-\leftmargin\fi%
  \@trivlist \labelwidth\z@ \leftmargin\z@
  \itemindent\z@ \def\makelabel##1{##1}}

\def\endmathtrivlist{\endtrivlist}
% \[ \]
\renewcommand\[{\relax
                \ifmmode\@badmath
                \else
                  \begin{mathtrivlist}%
                    \@beginparpenalty\predisplaypenalty
                    \@endparpenalty\postdisplaypenalty
                    \item[]\leavevmode
                    \hb@xt@\linewidth\bgroup $\m@th\displaystyle %$
                      \hskip\mathindent\bgroup
                \fi}
\renewcommand\]{\relax
                \ifmmode
                      \egroup $\hfil% $
                    \egroup
                  \end{mathtrivlist}%
                \else \@badmath
                \fi}
% EQUATION
\renewenvironment{equation}%
    {\@beginparpenalty\predisplaypenalty
     \@endparpenalty\postdisplaypenalty
     \refstepcounter{equation}%
     \mathtrivlist \item[]\leavevmode
       \hb@xt@\linewidth\bgroup $\m@th% $
         \displaystyle
         \hskip\mathindent}%
        {$\hfil % $
         \displaywidth\linewidth\hbox{\@eqnnum}%
       \egroup
     \endmathtrivlist}
% EQNARRAY
\renewenvironment{eqnarray}{%
    \stepcounter{equation}%
    \def\@currentlabel{\p@equation\theequation}%
    \global\@eqnswtrue\m@th
    \global\@eqcnt\z@
    \tabskip\mathindent
    \let\\=\@eqncr
%    \setlength\abovedisplayskip{\topsep}%
%    \ifvmode
%      \addtolength\abovedisplayskip{\partopsep}%
%    \fi
%    \addtolength\abovedisplayskip{\parskip}%
%    \setlength\belowdisplayskip{\abovedisplayskip}%
    \setlength\belowdisplayshortskip{\abovedisplayskip}%
    \setlength\abovedisplayshortskip{\abovedisplayskip}%
    $$\everycr{}\halign to\linewidth% $$
    \bgroup
      \hskip\@centering
      $\displaystyle\tabskip\z@skip{##}$\@eqnsel&%
      \global\@eqcnt\@ne \hskip \tw@\arraycolsep \hfil${##}$\hfil&%
      \global\@eqcnt\tw@ \hskip \tw@\arraycolsep
        $\displaystyle{##}$\hfil \tabskip\@centering&%
      \global\@eqcnt\thr@@
        \hb@xt@\z@\bgroup\hss##\egroup\tabskip\z@skip\cr}%
      {\@@eqncr
    \egroup
    \global\advance\c@equation\m@ne$$% $$
    \@ignoretrue
    }
%%% end of "vsfleqn2.sty"

\RequirePackage{keyval}
\RequirePackage{xcolor}
\definecolor{bmcblue}{rgb}{0,0.2,0.4}

\RequirePackage{lastpage}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% Modifications and "add-on" for article.cls starts:

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% Initiate some info:
%\def\journal@name{Submitted to BioMed Central}
\let\journal@name\@empty
\def\journal@url{http://www.biomedcentral.com/}
\def\journal@id{-bmc}
\def\paper@url{}
\def\info@line{}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% Page dimensions

%% dimensions: text 

  \setlength\parindent    {8\p@}
  \def\true@parindent     {8\p@}
  \if@twocolumn
  \setlength\textheight   {651\p@}% 648bp
  \setlength\textwidth    {484\p@}% 170mm
  \else
  \setlength\textheight   {653\p@}% 650.9bp
  \setlength\textwidth    {361\p@}% 127mm
  \fi


  \setlength\columnsep    {5mm}
  \@settopoint\columnsep
  \@tempdima=\textwidth
  \advance\@tempdima by-\columnsep
  \divide\@tempdima by2
  \setlength\columnwidth  {\@tempdima}
  \@settopoint\columnwidth
  \setlength\columnseprule{0\p@}

  \mathindent20\p@

%% dimensions: heads

  \setlength\headheight{12\p@}
  \setlength\headsep   {44\p@}
  \setlength\topskip   {14\p@}
  \setlength\footskip  {2\p@}
  \setlength\maxdepth  {.5\topskip}

%% dimensions: side margins

  \setlength\topmargin       {27\p@} % 12mm
  \if@twocolumn
    \setlength\oddsidemargin   {57\p@}% 20mm gutter margin 
    \setlength\evensidemargin  {57\p@}% 20mm outer  margin    
  \else
    \setlength\oddsidemargin   {118\p@}% 41.5mm gutter margin 
    \setlength\evensidemargin  {118\p@}% 41.5mm outer  margin
  \fi

  \advance\oddsidemargin  by-1in
  \advance\evensidemargin by-1in
  \advance\topmargin      by-1in

  \def\set@fp@margins{%
    \setlength\oddsidemargin   {179\p@}% 63mm first page gutter margin 
    \setlength\evensidemargin  {57\p@}% 20mm outer first page margin
    \advance\oddsidemargin  by-1in
    \advance\evensidemargin by-1in
  }
  \if@twocolumn\else
    \let\set@fp@margin@hook\set@fp@margins
  \fi

%% dimensions: skips

  \if@twocolumn
  \setlength\smallskipamount{6\p@ \@plus 1\p@ \@minus 1\p@}
  \setlength\medskipamount  {12\p@ \@plus 3\p@ \@minus 3\p@}
  \setlength\bigskipamount  {18\p@ \@plus 6\p@ \@minus 3\p@}
  \else
  \setlength\smallskipamount{7\p@ \@plus 1\p@ \@minus 1\p@}
  \setlength\medskipamount  {14\p@ \@plus 3\p@ \@minus 3\p@}
  \setlength\bigskipamount  {22\p@ \@plus 6\p@ \@minus 3\p@}
  \fi

%% dimensions: page-breaking penalties

  \clubpenalty=10000
  \widowpenalty=10000
  \if@twocolumn
    \displaywidowpenalty=50
  \fi
  \predisplaypenalty=10000   % Breaking before a math display.
  \pretolerance=100          % Badness tolerance for the first pass (before hyphenation)
  \tolerance=800             % Badness tolerance after hyphenation
  \hbadness=800              % Badness above which bad hboxes will be shown
  \emergencystretch=3\p@
  \hfuzz=1\p@                % do not be to critical about boxes


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% fontsizes

  \if@twocolumn
  \renewcommand\normalsize{%
     \@setfontsize\normalsize\@xpt{12\p@ \@plus.25\p@ \@minus.4\p@}%
     \abovedisplayskip 12\p@ \@plus2\p@ \@minus2\p@
     \abovedisplayshortskip 7\p@ \@plus2\p@
     \belowdisplayshortskip 7\p@ \@plus2\p@
     \belowdisplayskip \abovedisplayskip
     \let\@listi\@listI}
  \else
  \renewcommand\normalsize{%
     \@setfontsize\normalsize\@xpt{14.2\p@ \@plus.3\p@ \@minus.5\p@}%
     \abovedisplayskip 14.15\p@ \@plus2\p@ \@minus2\p@
     \abovedisplayshortskip 7\p@ \@plus2\p@
     \belowdisplayshortskip 7\p@ \@plus2\p@
     \belowdisplayskip \abovedisplayskip
     \let\@listi\@listI}
  \fi

  \renewcommand\small{%
     \@setfontsize\small\@ixpt{11\p@ plus .2\p@ minus .2\p@}%
     \abovedisplayskip 7.5\p@ \@plus4\p@ \@minus1\p@
     \belowdisplayskip \abovedisplayskip
     \abovedisplayshortskip \abovedisplayskip
     \belowdisplayshortskip \abovedisplayskip}

  \renewcommand\footnotesize{%
     \@setfontsize\footnotesize\@viiipt{9\p@ plus .1pt minus .1pt}%%
     \abovedisplayskip 6\p@ \@plus4\p@ \@minus1\p@
     \belowdisplayskip \abovedisplayskip
     \abovedisplayshortskip \abovedisplayskip
     \belowdisplayshortskip \abovedisplayskip}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% setattribute, getattribute, do@option@list

\def\setattribute{\@ifnextchar[\@setattribute{\@setattribute[]}}
\def\@setattribute[#1]#2#3#4{\expandafter\gdef\csname #2@#3\endcsname{#4}}
\def\getattribute#1#2{\csname #1@#2\endcsname}
\def\sep@key@value#1=#2/?/#3{\setattribute{#3}{#1}{#2}}
\def\do@option@list#1#2{%
  \@for\curr@option:={#2}\do{%
    \expandafter\sep@key@value\curr@option/?/{#1}\relax
  }%
}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% newpseudoenvironment
% same as \newenvironment, but new environment do not have additional groups \bgroup \egroup
% (i.e. all definitions are not local

\let\org@begin\begin
\let\org@end\end
\def\begin#1{%
  \@ifundefined{pseudo@#1}%
    {\org@begin{#1}}{\csname pseudo@#1\endcsname[0]\relax}%
  }
\def\end#1{%
  \@ifundefined{pseudo@#1}%
    {\org@end{#1}}{\csname pseudo@#1\endcsname[1]\relax}%
  }
\def\newpseudoenvironment#1#2#3{%
  \expandafter\gdef\csname pseudo@#1\endcsname[##1]{%
     \relax\ifcase##1\relax\def\@@next@@{#2}\or\def\@@next@@{#3}\else\let\@@next@@\relax\fi\@@next@@}%
  }


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% startlocaldefs, endlocaldefs

\def\startlocaldefs{\makeatletter}
\def\endlocaldefs{\makeatother}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% thanksref, thanksmark, thankslabel, thankstext
% to be safe with hyperref we will use original LaTeX definitions:
%

\def\saferef#1{\expandafter\safe@setref\csname r@#1\endcsname\@firstoftwo{#1}}
\let\safe@setref\@setref

\def\safelabel#1{%
  \@ifundefined{thanksnewlabel@#1}%
     {\@bsphack\protected@write\@auxout{}{\string\thanksnewlabel{#1}{{\@currentlabel}{\thepage}}}\@esphack}
     {}%
  \@namedef{thanksnewlabel@#1}{}}

\let\thanksnewlabel\newlabel

% we want to use various counters:
\def\usethankscounter#1{%
  \@ifundefined{current@thankscounter}{\gdef\previous@thankscounter{#1}}{\xdef\previous@thankscounter{\current@thankscounter}}%
  \def\current@thankscounter{#1}}

\def\restorethankscounter{\xdef\current@thankscounter{\previous@thankscounter}}

\newcounter{thanks}
%\def\thethanks{\@fnsymbol\c@thanks}
\def\thethanks{\@arabic\c@thanks}
\usethankscounter{thanks}

\def\thanksmark@fmt#1{\hbox{$^{#1}$}}
\def\thanksref@sep{,}

% hooks for the hyperref:
\def\thankref@hyperlink#1{\saferef{#1thanks}}
\def\thanks@hypertarget#1{}

% Isvedame zymes
\def\thanksref{\@ifnextchar[{\@tempswatrue\@thanksref}{\@tempswafalse\@thanksref[]}}

\def\@thanksref[#1]#2{%
  \if@tempswa% []
    \thanksmark@fmt{#1}%
  \else%
    \let\@tempa\@empty%
    \thanksmark@fmt{\@for\@tempb:=#2\do{%
       \@tempa\let\@tempa\thanksref@sep%
       \edef\@tempb{\expandafter\@firstofone\@tempb\@empty}%
       \thankref@hyperlink{\@tempb}}}%
   \fi}

% Suformuojame ir isvedame zyme
\def\thanksmark{\@ifnextchar[{\@tempswatrue\@thanksmark}{\@tempswafalse\@thanksmark[]}}

\def\@thanksmark[#1]#2{%  
   \@thankslabel[#1]{#2}%
   \safelabel{#2thanks}%
   \thanksmark@fmt{\expandafter\saferef{#2thanks}\thanks@hypertarget{#2}}}

% Suformuojame tik zyme
\def\thankslabel{\@ifnextchar[{\@tempswatrue\@thankslabel}{\@tempswafalse\@thankslabel[]}}

\def\@thankslabel[#1]#2{%
  \if@tempswa% []
     \protected@edef\@currentlabel{#1}%
   \else% 
      \refstepcounter{\current@thankscounter}%
   \fi%
   \safelabel{#2thanks}}%

% Suformuojame zyme ir idedame teksta i \@thanks:
\def\thankstext{\@ifnextchar[{\@tempswatrue\@thankstext}{\@tempswafalse\@thankstext[]}}

\def\@thankstext[#1]#2#3{%
  \@thankslabel[#1]{#2}%
  \protected@xdef\@thanks{\@thanks\protect\thanks@thefnmark{#2thanks}%
  \protect\@footnotetext{\thanks@hypertarget{#2}#3}}}%

\def\thanks@thefnmark#1{\begingroup\unrestored@protected@xdef\@thefnmark{\saferef{#1}}\endgroup}%



% ST makrosas savo numeracijos sistemos sukurimui
\def\setvaluelist#1#2{\@tempcnta=0\relax
  \@for\@curr@val:=#2\do{%
     \advance\@tempcnta by1\relax
     \expandafter\protected@xdef\csname #1@item@\the\@tempcnta\endcsname{\@curr@val}%
     }%
     \expandafter\protected@xdef\csname #1@item@0\endcsname{\the\@tempcnta}%
}
\xdef\getitemvalue#1#2{\noexpand\csname #1@item@#2\endcsname}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% \ead, \printead

\def\email@text{}
\def\url@text{http://}
\def\ead@sep{;~}

% naudojame keyval paketa
\define@key{ead}{email}[true]{\def\ead@type{email}}
\define@key{ead}{url}[true]{\def\ead@type{url}}
\define@key{ead}{label}{\def\ead@label{#1}}

\DeclareRobustCommand\ead[2][label= ,email]{{%
  \def\ead@type{email}% default
  \setkeys{ead}{#1}%
  \def\texttildelow{\noexpand\texttildelow}%
   \protected@edef\@currentlabel{#2}%
   \safelabel{\ead@label @\ead@type}}}

\newif\ifnot@ead@star

\DeclareRobustCommand{\printead}{\@ifstar{\not@ead@starfalse\@printead}{\not@ead@startrue\@printead}}

\def\@printead{\@ifnextchar[{\@tempswatrue\@@printead}{\@tempswafalse\@@printead[]}}

\def\@@printead[#1]#2{%
   \if@tempswa% []
     {\ead@size #1}%
   \else% 
     \def\ead@type{email}%
     \def\ead@prefix{mailto:}%
     \let\ead@text\email@text%
     \let\@ead@sep\relax%
     \@for\ead@ref:=#2\do{%
         \@ead@sep\let\@ead@sep\ead@sep%
         \@ifundefined{r@\ead@ref @url}{}{\let\ead@text\url@text\def\ead@type{url}\def\ead@prefix{http://}}%
         \ifnot@ead@star\ead@text\fi{\ead@size\def\null{}\ims@href{\ead@prefix\saferef{\ead@ref @\ead@type}}{\saferef{\ead@ref @\ead@type}}}%
         \let\ead@text\relax}%                        
   \fi%
}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% normaltext, nohyphen, no@harm

% normalus tekstas (justify)
\def\normaltext{\let\\=\@normalcr%
  \leftskip\z@ \@rightskip\z@ \rightskip\@rightskip%
  \parfillskip\@flushglue}

% skiemenavimo isjungimas
\def\nohyphen{\pretolerance=\@M \tolerance=\@M \hyphenpenalty=\@M \exhyphenpenalty=\@M}

\def\no@harm{\let\thanks=\@gobble\let\thanksref=\@gobble\let~\space\def\ead[##1]##2{}\let\\=\@empty \def\protect{\noexpand\protect\noexpand}}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% url@fmt


\def\journalurl#1{\def\journal@url{#1}}
\def\paperurl#1{\def\paper@url{#1}}

\def\doi#1{%
  \gdef\@doi{#1}%
  \gdef\doi@text{\url@fmt{DOI: }{\ttfamily}{#1}{\doi@base\@doi}}%
}

\def\@doi{}

\def\doi@base{http://dx.doi.org/}

% {url}{text}
\def\ims@href#1#2{#2}

% {prefix}{font}{text}{url}

\def\url@fmt#1#2#3#4{%
   \edef\@tempa{#3}%
   \ifx\@tempa\@empty%
   \else%
     #1{#2\ims@href{#4}{#3}}%
   \fi}

%%%%%%%%%%%%%%%%%%% doiurl

\@ifundefined{doi@base}{\def\doi@base{http://dx.doi.org/}}{}

\DeclareRobustCommand\doiurl[1]{{%
 \def\\{}%
 \check@doiurl@prefix#1http://\end%
 \check@doiurl@break#1\\\end\relax%
 \if@doiurlbreak%
    \@ifundefined{doi@url}{%
       \ims@href{\doi@base\@tempx\@tempy}{\csname doi@size\endcsname\@tempx}%
       \break%
       \ims@href{\doi@base\@tempx\@tempy}{\csname doi@size\endcsname\@tempy}}%
                          {%
       \expandafter\ims@href{\@tempx\@tempy}{\csname doi@size\endcsname\@tempx}%
       \break%
       \ims@href{\@tempx\@tempy}{\csname doi@size\endcsname\@tempy}}%
 \else%
    \@ifundefined{doi@url}%
        {\ims@href{\doi@base#1}{\csname doi@size\endcsname #1}}%
        {\ims@href{#1}{\csname doi@size\endcsname #1}}%
 \fi}}


\def\check@doiurl@prefix#1http://#2\end{\ifx.#2.\else\def\doi@url{fullurl}\fi}

\newif\if@doiurlbreak \@doiurlbreakfalse

\def\check@doiurl@break#1\\#2\end{%
    \ifx.#2.\@doiurlbreakfalse%
    \else%
       \@doiurlbreaktrue%
       \def\@tempx{#1}%
       \def\@tempy{#2}%
    \fi}

%%%%%%%%%%%%%%%%%%% arxivurl

%% \arxivurl{http://arxiv.org/abs/math.PR/0603300}
%% \arxivurl{math.PR/0603300}
%% \arxivurl{http://\\arxiv.org/abs/math.PR/0603300}
%% \arxivurl{math.PR/\\0603300}

\@ifundefined{arxiv@base}{\def\arxiv@base{http://arxiv.org/abs/}}{}

\DeclareRobustCommand\arxivurl[1]{{%
 \def\\{}%
 \check@arxivurl@prefix#1http://\end%
 \check@arxivurl@break#1\\\end\relax%
 \if@arxivurlbreak%
    \@ifundefined{arxiv@url}{%
       \ims@href{\arxiv@base\@tempx\@tempy}{\csname arxivurl@size\endcsname\@tempx}%
       \break%
       \ims@href{\arxiv@base\@tempx\@tempy}{\csname arxivurl@size\endcsname\@tempy}}%
                            {%
       \expandafter\ims@href{\@tempx\@tempy}{\csname arxivurl@size\endcsname\@tempx}%
       \break%
       \ims@href{\@tempx\@tempy}{\csname arxivurl@size\endcsname\@tempy}}%
 \else%
    \@ifundefined{arxiv@url}%
        {\ims@href{\arxiv@base#1}{\csname arxivurl@size\endcsname #1}}%
        {\ims@href{#1}{\csname arxivurl@size\endcsname #1}}%
 \fi}}


\def\check@arxivurl@prefix#1http://#2\end{\ifx.#2.\else\def\arxiv@url{fullurl}\fi}

\newif\if@arxivurlbreak \@arxivurlbreakfalse

\def\check@arxivurl@break#1\\#2\end{%
    \ifx.#2.\@arxivurlbreakfalse%
    \else%
       \@arxivurlbreaktrue%
       \def\@tempx{#1}%
       \def\@tempy{#2}%
    \fi}



%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% RUNNING HEADS

\def\runtitle#1{\gdef\@runtitle{#1}}                      
\def\runauthor#1{\gdef\@runauthor{#1}\global\let\copauthor\@runauthor}
\def\@runauthor{}
\def\@lastpage{0}

\def\thepage@fmt#1{Page #1 of \@lastpage}
\def\thepage@fmt#1{Page #1 of \pageref{LastPage}}

\def\headline@hook{}
\let\ps@copyright@hook\relax

% normal RH
\def\ps@bmcheadings{%
      \def\etal{\textit{et al.}}%
      \let\@mkboth\@gobbletwo%
      \def\@evenfoot{\csname footline@hook\endcsname\hfill}%
      \let\@oddfoot\@evenfoot
      \def\@oddhead{\headline@hook\hskip-\rhindent@width\hbox to\z@{\parbox[t]{\textarea@width}{\runninghead@size\runninghead@text}\hss}\hfill}%
      \let\@evenhead\@oddhead%
}%


% First page RH
\def\ps@copyright{\csname set@fp@margin@hook\endcsname%
  \def\etal{\textit{et al.}}%
  \let\@mkboth\@gobbletwo%
  \def\@evenhead{\ps@copyright@hook\headline@hook\hskip-\leftarea@width\parbox[t]{\textarea@width}{\copyright@size\copyright@text}\hfill}%
  \let\@oddhead\@evenhead%
  \def\@oddfoot{\csname footline@hook\endcsname\hfill\hfill}%
  \let\@evenfoot\@oddfoot}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% LIST ENVIRONMENTS

\parsep\z@
\topsep\z@
\partopsep\z@
\itemsep\z@
\labelsep.5em

\def\@listI{\leftmargin\leftmargini
            \parsep\z@
            \topsep\z@
            \itemsep\z@}

\def\list@parindent{8\p@}


\def\labelenumi{\theenumi\hskip6\p@}

% quotation
\let\quotation@size\normalsize
\def\quotation@itemindent{\list@parindent}
\def\quotation@parindent{\list@parindent}
\def\quotation@leftmargin{\list@parindent}
\let\quotation@rightmargin\z@
\let\quotation@topsep\smallskipamount

\def\quotation{%
        \list{}{\quotation@size%
        \listparindent\quotation@parindent%
        \itemindent   \quotation@itemindent%
        \rightmargin\quotation@rightmargin   \leftmargin\quotation@leftmargin%
        \partopsep\z@ \topsep\quotation@topsep \parsep\z@%
                        }%
        \item[\Q@strut]\relax}

\def\endquotation{\endlist}

\def\Q@strut{\leavevmode\hbox{\vrule height9pt depth1pt width0pt}}

% quote
\let\quote@size\normalsize
\def\quote@indent{\z@}
\def\quote@leftmargin{2pc}
\def\quote@rightmargin{\z@}
\let\quote@topsep\smallskipamount

\def\quote{%
        \list{}{\quote@size%
        \listparindent\quote@indent%
        \itemindent \listparindent%
        \rightmargin\quote@rightmargin   \leftmargin\quote@leftmargin%
        \partopsep\z@ \topsep\quote@topsep \parsep\z@%
                       }%
        \item\relax}

\def\endquote{\endlist}

\def\@listii {\leftmargin\leftmarginii
              \labelwidth\leftmarginii
              \advance\labelwidth-\labelsep
              \topsep\z@
              \parsep\z@
              \itemsep   \parsep}

\def\@listiii{\leftmargin\leftmarginiii
              \labelwidth\leftmarginiii
              \advance\labelwidth-\labelsep
              \topsep\z@
              \parsep z@
              \partopsep\z@
              \itemsep\topsep}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% TABLE, FIGURE

% settings for table caption
\setattribute{floatcaption}    {size}{\footnotesize\bfseries\mathversion{bold}\raggedright}
\setattribute{floatcaptionname}{size}{\bfseries}

\setlength\abovecaptionskip{0\p@}
\setlength\belowcaptionskip{4\p@}

\long\def\@makecaption#1#2{
    \vskip\abovecaptionskip
    \parbox[t]{\hsize}{\floatcaption@size{\floatcaptionname@size #1}\hskip.5em #2\par}%
    \vskip\belowcaptionskip}


\def\@floatboxreset{%
        \reset@font
        \footnotesize
        \sffamily
        \@setminipage
        \centering
}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% FIGURE - in box

\newbox\bmcfloat@box
\newif\if@figurestar

\setattribute{figure}{sep}{6.25\p@}

\def\figure{\@figurestarfalse\@ifnextchar[{\@figure}{\@figure[t]}}

\def\@figure[#1]{\def\figure@pars{#1}%
               \def\@captype{figure}%
               \def\csentence##1{{\mathversion{bold}\bfseries ##1}}%
%               \csname @figure@hook\endcsname% 
%               \let\@makecaption\@makefigurecaption%
%               \let\@floatboxreset\figure@boxreset%
               \setbox\bmcfloat@box=\vbox\bgroup\figure@settings}

\def\endfigure{%
  \par%
  \egroup%
  \edef\reserved@a{\noexpand\@xfloat{figure}[\figure@pars]}
  \reserved@a\makefigure@float\end@float
}


\DeclareRobustCommand\fig@textbf[1]{{\floatcaptionname@size #1}}%

\def\figure@settings{%
  \let\textbf\fig@textbf%
  \setattribute{floatcaption}{size}{\footnotesize\sffamily\raggedright}
  \if@figurestar\hsize=\textwidth\fi%
  \@tempdima\hsize%
  \advance\@tempdima by-\figure@sep%
  \advance\@tempdima by-\figure@sep%
  \hsize\@tempdima%
  \parindent\z@%
  \centering%
  \setlength\abovecaptionskip{6\p@}%
  \setlength\belowcaptionskip{0\p@}%
}

\def\makefigure@float{
  \setlength{\fboxsep}{\figure@sep}%
  \setlength{\fboxrule}{0.25\p@}%
  \fcolorbox{bmcblue}{white}{\box\bmcfloat@box}}

\@namedef{figure*}{\@figurestartrue\@ifnextchar[{\@figure}{\@figure[t]}}

\@namedef{endfigure*}{%
  \egroup%
  \edef\reserved@a{\noexpand\@xdblfloat{figure}[\figure@pars]}
  \reserved@a\makefigure@float\end@dblfloat
}



%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% FOOTNOTE

\def\footnoterule{\kern-3\p@ \hrule \@width \footnoterule@width \kern 2.6\p@} % the \hrule is .4pt high

\let\orig@footnoterule\footnoterule

\renewcommand\@makefntext[1]{\noindent\parindent8\p@\@makefnmark #1}

\def\@makefnmark{\csname makefnmark@hook\endcsname\@textsuperscript{\normalfont[\@thefnmark]}}%

% hook for hyperref
\def\@makefntext@fmt#1{\@makefnmark}

\def\freefootnotetext[#1]{%
       \begingroup\unrestored@protected@xdef\@thefnmark{#1}\endgroup\@footnotetext}

\def\footnote@size{\fontsize{7}{8}\raggedright}

\long\def\@footnotetext#1{\insert\footins{%
    \reset@font\footnote@size
    \interlinepenalty\interfootnotelinepenalty
    \splittopskip\footnotesep
    \splitmaxdepth \dp\strutbox \floatingpenalty \@MM
    \hsize\columnwidth \@parboxrestore
    \protected@edef\@currentlabel{%
       \csname p@footnote\endcsname\@thefnmark
    }%
    \color@begingroup
      \@makefntext{%
        \rule\z@\footnotesep\ignorespaces#1\@finalstrut\strutbox}%
    \color@endgroup}}%



%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% MAIN SETTINGS - COMMON FOR 1 and 2 col's layouts


\setattribute{frontmatter} {style} {\raggedright}
\setattribute{address}     {style} {\raggedright}
\setattribute{affiliation} {style} {\raggedright}
\setattribute{abstract}    {style} {\raggedright}
\setattribute{keyword}     {style} {\normaltext\raggedright}
\setattribute{backmatter}  {style} {\raggedright}

% FRONT MATTER SKIPS
%\setattribute{dochead}     {skip} {-\topskip}
\setattribute{title}       {skip} {\z@}
\setattribute{subtitle}    {skip} {5\p@}
\setattribute{authors}     {skip} {10\p@}
\setattribute{note}        {skip} {8\p@}
\setattribute{copyright}   {skip} {23\p@}
\setattribute{address}     {skip} {4\p@ plus 2\p@}
\setattribute{history}     {skip} {\Smallskipamount}
\setattribute{abstract}    {skip} {0\p@}
\setattribute{keyword}     {skip} {5\p@}
\setattribute{abbr}        {skip} {\medskipamount}
\setattribute{frontmatter} {skip} {\bigskip}

\setattribute{copyrightlogo}{cmd}{}

% FRONT MATTER FONTS 
\setattribute{dochead}     {size} {\sffamily\fontsize{13pt}{13pt}\bfseries\selectfont\color{white}}
\setattribute{title}       {size} {\sffamily\fontsize{24pt}{26pt}\selectfont\raggedright}
\setattribute{subtitle}    {size} {\sffamily\fontsize{20pt}{22pt}\selectfont\raggedright}
\setattribute{author}      {size} {\sffamily\fontsize{11pt}{14pt}\selectfont\raggedright}
\setattribute{address}     {size} {}
\setattribute{note}        {size} {\sffamily\fontsize{10pt}{13pt}\selectfont\raggedright}
\setattribute{thanksbox}   {size} {\sffamily\fontsize{7pt}{9pt}\selectfont\raggedright}
\setattribute{history}     {size} {\mdseries}
\setattribute{abstract}    {size} {\sffamily\fontsize{10}{12}\selectfont}
\setattribute{abstractname}{size} {\bfseries}
\setattribute{keyword}     {size} {\sffamily\fontsize{10}{12}\selectfont}
\setattribute{keywordname} {size} {\bfseries}

\setattribute{runninghead} {size} {\sffamily\fontsize{8}{10}\selectfont}
\setattribute{footline}    {size} {\sffamily\fontsize{7}{8}\selectfont}
\setattribute{copyright}   {size} {\sffamily\fontsize{8}{10}\selectfont}
\setattribute{backmatter}  {size} {\sffamily\fontsize{7}{9}\selectfont\raggedright}
\setattribute{ead}         {size} {}

% COPYRIGHT TEXT, etc.
\setattribute{address}          {text} {Author details}
\setattribute{corref}           {text} {Correspondence: }
\setattribute{authorinfo}       {text} {Full list of author information is available at the end of the article\endgraf}
\setattribute{presentaddress}   {text} {\textit{Present address: }}
\setattribute{copyright}        {text} {\@runauthor\ \textit{\journal@name}}
\setattribute{runninghead}      {text} {\@runauthor\ \textit{\journal@name} \hfill \thepage@fmt{\thepage}}
\setattribute{footline}         {text} {\textcopyright\ \@copyrt\ \copyrightowner@text} 
\setattribute{pdfsubject}       {text} {\journal@name}

% URL
\setattribute{article} {url} {}

% SEPARATIONS

\setattribute{author}           {sep} {, }
\setattribute{authorand}        {sep} {~and }
\setattribute{address}          {sep} {. }

% KEYWORDS
\setattribute{keyword} {AMS}      {AMS Subject Classification}
\setattribute{keyword} {MSC}      {Mathematics Subject Classification}
\setattribute{keyword} {MSC2010}  {Mathematics Subject Classification (2010)}
\setattribute{keyword} {MSCnoyear}{Mathematics Subject Classification}
\setattribute{keyword} {KWD}      {Keywords}
\setattribute{keyword} {JEL}      {JEL Classification}
\setattribute{keyword} {PACS}     {PACS Codes}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% FRONT MATTER FORMATTING PARAMETERS


% FRONT MATTER SKIPS
\if@twocolumn
\setattribute{abstractbox} {skip} {24\p@}
\else
\setattribute{abstractbox} {skip} {-1\p@}
\fi

\setattribute{frontmatter} {cmd}  {%
                                  \frontmatter@skip%
                                  \global\@afterindentfalse%
                                  \@afterheading}

% FRONT MATTER DIMENSIONS
\setattribute{textarea}    {width} {484\p@} %170mm            1 puslapio maksimalus plotis
\if@twocolumn
\setattribute{leftarea}    {width} {\z@}
\setattribute{rhindent}    {width} {\z@}
\else
\setattribute{leftarea}    {width} {122\p@} %38mm+5mm=43mm
\setattribute{rhindent}    {width} {61\p@}  %21.5mm = 41.5-20 rh issikisimas normaliuose puslapiuose
\fi
\setattribute{leftcol}     {width} {108\p@} %38mm             1 puslapio isnasu dezutes plotis
\setattribute{colsep}      {width} {14\p@}  %5mm
\if@twocolumn
\setattribute{footnoterule}{width} {\columnwidth}% 
\else
\setattribute{footnoterule}{width} {\textwidth}%
\fi


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% FRONTMATTER

% COUNTERS, ETC
\newcounter{author}
\newcounter{address}
\newdimen\sv@mathsurround
\let\hy@frontmatter\relax
\let\hy@endfrontmatter\relax

\def\frontmatter{%
  \global\c@author\z@
  \global\c@address\z@
%
  \thispagestyle{copyright}%
%
  \csname frontmatter@hook \endcsname%
  \sv@mathsurround\mathsurround% 
  \m@th
  \set@frontmatter@cmd
  \set@frontmatter@keys
  \parindent\z@
  \frontmatter@style
  \hy@frontmatter
  \ignorespaces}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% ENDFRONTMATTER

\def\endfrontmatter{%
  \global\@topnum\z@
%
  \@thanks%
%
  \write@pdfinfo{\hy@fauthor}{\csname fauthor@\firstauthor@id\endcsname}
  \write@pdfinfo{\hy@author}{\the\authors@list}
  \write@pdfinfo{\hy@subject}{\pdfsubject@text}
  \write@pdfinfo{\hy@keywords}{\the\keywords@list}
%
  \hy@endfrontmatter
%
  \immediate\write\@mainaux{\string\global\string\@namedef{num@address}{\the\c@address}}%
  \immediate\write\@mainaux{\string\global\string\@namedef{num@author}{\the\c@author}}%  
  \set@authorcorref@notset%
%
  \global\mathsurround\sv@mathsurround
  \global\let\@thanks\@empty  
%
  \set@runauthor
%
  \csname frontmatter@hook\endcsname%
  \aftergroup\frontmatter@cmd
  \aftergroup\insert@thanksbox
  }
  \if@twocolumn
  \def\insert@thanksbox{\insert\footins{\unvbox\thanks@box}}
  \else
  \let\insert@thanksbox\relax
  \fi


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% \set@frontmatter@cmd

\def\set@frontmatter@cmd{%
  \let\maketitle\relax
  \let\fmbox\bmc@fmbox
  \let\endfmbox\bmc@endfmbox
  \let\dochead\bmc@dochead
  \let\title\bmc@title
  \let\subtitle\bmc@subtitle
  \let\author\bmc@author
  \let\address\bmc@address
  \let\artnotes\bmc@artnotes
  \let\endartnotes\bmc@endartnotes
  \let\abstractbox\bmc@abstractbox
  \let\endabstractbox\bmc@endabstractbox
  \let\abstract\bmc@abstract
  \let\endabstract\bmc@endabstract
  \let\keyword\bmc@keyword
  \let\endkeyword\bmc@endkeyword
  \let\thanksbox\bmc@thanksbox
  \let\endthanksbox\bmc@endthanksbox
}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% FMBOX 

\newif\if@fmbox \@fmboxfalse
\newbox\fm@box

\def\bmc@fmbox{%
  \setbox\fm@box=\vbox\bgroup
  \@fmboxtrue
  \hsize=\textarea@width
  }

\def\bmc@endfmbox{%
  \par
  \auto@set@thanksbox%
  \csname endfmbox@hook\endcsname%
\egroup%
\if@twocolumn
   \emergencystretch=1pc \twocolumn[\box\fm@box\medskip]
\else
   \hbox to\textwidth{\hss\box\fm@box}
   \vskip\abstract@skip
   \vbox to\z@{\llap{\box\thanks@box\hskip\colsep@width}\vss}
\fi}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% DOCHEAD

\let\dochead@hook\relax

\def\bmc@dochead{\@ifnextchar[{\dochead@fmt}{\dochead@fmt[]}}

\def\dochead@fmt[#1]#2{%
\bgroup%
  \@tempdima=\hsize%
  \advance\@tempdima by-8\p@%
  \setlength{\fboxsep}{4\p@}%
  \setlength{\fboxrule}{\z@}%
  \fcolorbox{bmcblue}{bmcblue}{\hbox to\@tempdima{\dochead@size\MakeUppercase{#2}\hfill\fontshape{n}\selectfont\smash{\dochead@hook}}}
\egroup}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% TITLE 

\let\PREHOOK@title@fmt\@gobble

\def\bmc@title{\@ifnextchar[{\title@fmt}{\title@fmt[]}}

\def\title@fmt[#1]#2{%
  \vskip\title@skip%
  \setkeys{title}{#1}%
  \bgroup%
    \no@harm%
    \let\protect\relax%
    \xdef\@runtitle{#2}%
  \egroup%
  \bgroup%
    \no@harm%
    \let\protect\relax%
    \xdef\@argi{#2}%
  \egroup%
  \write@pdfinfo{\hy@title}{\@argi}%
  \bgroup
    \PREHOOK@title@fmt{#2}%
    \title@size\csname pretitle@text\endcsname #2\par%
  \egroup}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% SUBTITLE

\def\bmc@subtitle{\@ifnextchar[{\subtitle@fmt}{\subtitle@fmt[]}}

\def\subtitle@fmt[#1]#2{%
   \vskip\subtitle@skip
   \setkeys{title}{#1}%
   \bgroup%
      \subtitle@size #2\par%
   \egroup}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% set@frontmatter@keys

\def\set@frontmatter@keys{%
   \@tempcnta=0\relax%
   \@ifundefined{num@address}{}{\@tempcnta=\num@address\relax}%
   \ifnum\@tempcnta=1\relax%
%      \define@key{author}{addressref}{}%
%      \define@key{author}{presentaddressref}{}%       
      \define@key{author}{corref}{}%
      \global\let\address@thanksref\@gobble
      \global\let\printaddresses\relax
   \fi%
   \@tempcnta=0\relax%
   \@ifundefined{num@author}{}{\@tempcnta=\num@author\relax}%
   \ifnum\@tempcnta=1\relax%
      \global\@namedef{num@address}{1}
%      \define@key{author}{addressref}{}%
%      \define@key{author}{presentaddressref}{\expandafter\gdef\csname presentaddressref@##1\endcsname{}}%       
%      \gdef\printauthor##1{\unskip}%
      \global\let\address@thanksref\@gobble
      \global\let\printaddresses\relax
      \global\let\corref@thanksmark\@gobble
      \global\let\corref@thanksref\@gobble
   \fi%
}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% \thanksmark etc

\def\thanksmark@fmt#1{{\textsuperscript{#1}}}

\def\thethanks{\getitemvalue{bmcsymbol}{\@arabic\c@thanks}}

\setvaluelist{bmcsymbol}{*,\textdagger,\^{}}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% AUTHOR - keys

% \author[id=au1,addressref={aff1,aff2},presentaddressref=aff3,corref={aff1,aff2},thanksref={t1}]{\inits{}\fnm{} \snm{} \suffix{}\ead{}}
%    \author@au1 =\inits \snm  \suffix
%    \fauthor@au1=\fnm \snm  \suffix
%    \corref@au1 =\corref@text
%
% automatiniam formatavimui:
%    \def\addressref@aff1{}
%    \emaillist@au1            ={e1,e2}
%    \authorslist@aff1         ={au1,au2}
%    \authorslist@present@aff1 ={au1,au2}
%    \correflist@au1           ={aff1,aff2}
%    \authors@id@list          ={au1,au2,au3...}
%
% tikriname ar nebuvo panaudotas id:

  \def\check@xx@id#1#2{\@ifundefined{#1@#2}{}{\@latex@error{Command  <#1>: id=#2 was allready used!}{}}}

  \newif\ifauthor@corref
  \newif\ifauthor@email

  \define@key{author}{id}{%
     \def\author@id{#1}%
     \check@xx@id{author}{#1}%
     \@ifundefined{authors@id@list}{\xdef\authors@id@list{#1}}{\xdef\authors@id@list{\authors@id@list,#1}}}

  \define@key{author}{email}{%
    \author@emailtrue%
    \ead[label=\author@id]{#1}}

  \define@key{author}{thanksref}{%
     % \current@thanksref@list={aff1,aff2}
     % \def\thanksref@aff1{}
     \edef\current@thanksref@list{#1}%
     \@for\thanksref@id:=#1\do{\expandafter\gdef\csname thanksref@\thanksref@id\endcsname{}}}

% alias for  thanksref
  \define@key{author}{noteref}{%
     % \current@thanksref@list={aff1,aff2}
     % \def\thanksref@aff1{}
     \edef\current@thanksref@list{#1}%
     \@for\thanksref@id:=#1\do{\expandafter\gdef\csname thanksref@\thanksref@id\endcsname{}}}

  \define@key{author}{addressref}{%
     % \current@address@list={aff1,aff2}
     % \def\addressref@aff1{}
     \edef\current@address@list{#1}%
     \@for\addressref@id:=#1\do{\expandafter\gdef\csname addressref@\addressref@id\endcsname{}}}

  \define@key{author}{presentaddressref}{%
     % \current@address@list={aff1,aff2}%
     % \def\presentaddressref@aff1{}%
     \@ifundefined{addressref@#1}{\edef\current@paddress@list{#1}}{}%
     \@for\addressref@id:=#1\do{\expandafter\gdef\csname presentaddressref@\addressref@id\endcsname{}}%
     \@for\addressref@id:=#1\do{\expandafter\gdef\csname addressref@\addressref@id\endcsname{}}}

  \define@key{author}{corref}[]{%
%    \corref@list={aff1,aff2}%
     \global\let\set@authorcorref@notset\relax%
     \global\author@correftrue%
     \ifx.#1.\else\xdef\corref@list{#1}\fi%
}

  \def\add@to@addressref@list#1{\@ifundefined{addressref@list}{\edef\addressref@list{#1}}{\edef\addressref@list{\addressref@list, #1}}}
  \def\add@to@thanksref@list#1{\@ifundefined{thanksref@list}{\edef\thanksref@list{#1}}{\edef\thanksref@list{\thanksref@list, #1}}}

  \def\set@authorcorref@notset{\immediate\write\@mainaux{\string\global\string\authorcorref@notsettrue}}

  \def\set@author@lists{%
     \let\thanksref@list\relax%
     \let\addressref@list\relax%
     \@ifundefined{current@address@list}{}{\add@to@addressref@list{\current@address@list}}%
     \@ifundefined{current@paddress@list}{}{\add@to@addressref@list{\current@paddress@list}}%
     \@ifundefined{current@thanksref@list}{}{\add@to@thanksref@list{\current@thanksref@list}}%
}

  \def\print@author@lists{%
      \@ifundefined{addressref@list}{}{\address@thanksref{\addressref@list}}%
      \ifauthor@corref\def\thanksref@sep{}\corref@thanksref{\corr@author@id}\fi%
      \@ifundefined{thanksref@list}{}{\def\thanksref@sep{}\thanksref{\thanksref@list}}%
}

\let\address@thanksref\thanksref
\let\corref@thanksref\thanksref


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% AUTHOR
% if corref is not set, we will use first author with an email as a corresponding author
% \corr@author@id -> {au1}
% \corref@list    -> {aff1,aff2}

\newif\ifauthorcorref@notset \authorcorref@notsetfalse


\def\bmc@author{\@ifnextchar[{\author@fmt}{\author@fmt[]}}

\def\author@fmt[#1]#2{%
  \stepcounter{author}{%
  \csname author@cmd\endcsname%
  \author@correffalse%
  \xdef\author@id{au\the\c@author}%
  \setkeys{author}{#1}%
     \@ifundefined{num@author}{\@tempcnta=10\relax}{\@tempcnta=\num@author\relax}%
     \def\a@sep{, }%
     \ifnum\@tempcnta>1\relax%
       \ifnum\c@author=\@tempcnta% 
          \let\a@sep\authorand@sep%
        \else% 
          \let\a@sep\author@sep%
        \fi%
     \fi%
%
  \ifauthorcorref@notset%
    \ifauthor@email% email is set
       \author@correftrue%
       \global\authorcorref@notsetfalse%
    \fi%
  \fi%
  \ifauthor@corref%
     \xdef\corr@author@id{\author@id}%
     \@ifundefined{corref@list}%
       {\@ifundefined{current@address@list}{}{\xdef\corref@list{\current@address@list}}}%
       {}%
  \fi%
%
  \ifnum\c@author=1 \author@fmt@init \let\a@sep\relax \xdef\first@author@id{\author@id}\fi%
  \bgroup% F. Author
    \def\inits##1{##1}\def\fnm##1{}\def\snm##1{##1}\def\particle##1{##1}\def\suffix##1{##1}%
    \no@harm%
    \xdef\author@arg{#2}%
  \egroup%
  \expandafter\protected@xdef\csname author@\author@id\endcsname{\author@arg}%
  \bgroup% First Author
    \def\inits##1{}\def\fnm##1{##1}\def\particle##1{##1}\def\snm##1{##1}\def\suffix##1{##1}%
    \no@harm%
    \xdef\author@arg{#2}%
    \ifnum\c@author=1\addto@authors@list{#2}\xdef\firstauthor@id{\author@id}\else\addto@authors@list{, #2}\fi%
  \egroup%
  \expandafter\protected@xdef\csname fauthor@\author@id\endcsname{\author@arg}%
  \bgroup% Author
    \def\inits##1{}\def\fnm##1{\ignorespaces}\def\particle##1{}\def\snm##1{##1}\def\suffix##1{}%
    \no@harm%
    \expandafter\xdef\csname runauthor@\the\c@author @snm\endcsname{#2}%
  \egroup%
  \bgroup% 
     \author@size%
     \def\inits##1{}\def\fnm##1{##1}\def\snm##1{##1}\def\particle##1{##1}\def\suffix##1{##1}%     
     \set@author@lists%
     \a@sep\authorname@fmt{#2}\print@author@lists%
  \egroup}%
  \ignorespaces}

\def\author@fmt@init{%
   \vskip\authors@skip%
   \author@size%
   \leavevmode}

\def\authorname@fmt#1{#1}

\def\set@runauthor{%
  \ifnum\c@author=1\relax
     \gdef\@runauthor{\@nameuse{runauthor@1@snm}}%
  \else
    \ifnum\c@author=2\relax
       \gdef\@runauthor{\@nameuse{runauthor@1@snm} and \@nameuse{runauthor@2@snm}}%
    \else
       \@ifundefine

references.bib500 B

@book{darwin1859,
  author    = {Darwin, Charles},
  title     = {On the Origin of Species by Means of Natural Selection},
  publisher = {John Murray},
  address   = {London},
  year      = {1859}
}

@article{doudna2014,
  author  = {Doudna, Jennifer A. and Charpentier, Emmanuelle},
  title   = {The New Frontier of Genome Engineering with CRISPR-Cas9},
  journal = {Science},
  volume  = {346},
  number  = {6213},
  pages   = {1258096},
  year    = {2014},
  doi     = {10.1126/science.1258096}
}

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main.synctex.gzprebuilt · 6.1 KBReplaced by the first recompile.
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